Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031081.1 Length=45206 Score E Sequences producing significant alignments: (Bits) Value seq3088451 95.1 3e-15 seq2800887 80.6 7e-11 >seq3088451 Length=13260 Score = 95.1 bits (104), Expect = 3e-15 Identities = 204/305 (67%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 16759 ACCAACTGATCGCAGCGCTGCGCAATCTGGTAGAGCGCGTATCGGTTTAGCATTTGCGGT 16818 |||||||| ||||| ||| || || |||| ||| | | || | ||| ||| Sbjct 12148 ACCAACTGGTCGCAATACTGTGCGATTCGGTAAAGCTCCCACTTGTCCACCATCCACGGC 12089 Query 16819 TTGATACGCCGACCGAGGCCGAAGCGCTCAGTAATACAAATATCGTACCAGTGCCACGCA 16878 ||||| || || || || || || || || | || || |||| | ||| || Sbjct 12088 TTGATGCGGCGGCCCAGACCAAAACGGTCTTGGGTGCAGATGCCGTAGGTGATCCAGGCC 12029 Query 16879 GGGTTATCCGTCCATGCGCGTTTAAACGTGCCGTCCCAGTCCCCGGAATAGGTATGATTA 16938 ||||||| ||||| || ||| | |||||||||||| | ||||| ||||| | Sbjct 12028 GGGTTATTGGTCCAGGCCTCTTTCATGGTGCCGTCCCAGGCGCCGGAGTAGGTGCGGGCC 11969 Query 16939 ATCGGGTCGTAGTTGTTCGGTATTAGAACTTTGCGGCCTTTGCACTTGATGGACACGCGC 16998 | ||| ||||||||| |||| | | ||| | || ||||| | || |||| | Sbjct 11968 ACCGGATCGTAGTTGCTCGGCACCTGCCACCGGCGCGCCTTACACTTCACGGTCACGGCC 11909 Query 16999 GGGATGTTCTGGAACGCTTTGGCGTCGAACTCCACAAACAACAGCGCGGTTAGCGGGTAA 17058 || |||||| |||| | |||||||||||| || |||| ||||||||| ||||| Sbjct 11908 GGAATGTTCGTGAACTGCTCGGCGTCGAACTCGACGAACAGCAGCGCGGTGTTTGGGTAG 11849 Query 17059 CGCAG 17063 ||||| Sbjct 11848 CGCAG 11844 >seq2800887 Length=235 Score = 80.6 bits (88), Expect = 7e-11 Identities = 97/132 (73%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 33514 GACGTTAAAGTCCATACCGATAATCAGCGTGTCGTCCGGCTGCACTTCTTCGGTGCTGGC 33573 |||||| |||||||||||||| | ||||| ||| | |||||||| ||| || | Sbjct 229 GACGTTGAAGTCCATACCGATGAACAGCGGCTCGCCGGGCTGCACGGTGTCGAAGCACCC 170 Query 33574 GTTCTCCTCGCGGTTGAACATCTTGTACACCGCGCCCGACGTAAGGTTAACAAACAGGCC 33633 ||| || ||||| | | | |||| | || |||||||||||||| || ||| |||| Sbjct 169 GTTGAGCTTGCGGTCGTAAGCCGTGTAAATCGTTCCCGACGTAAGGTTGACGAACTGGCC 110 Query 33634 GTTCAGGTACGC 33645 || |||||||| Sbjct 109 CTTGAGGTACGC 98 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139236529135776