Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_031081.1
Length=45206
Score E
Sequences producing significant alignments: (Bits) Value
seq3088451 95.1 3e-15
seq2800887 80.6 7e-11
>seq3088451
Length=13260
Score = 95.1 bits (104), Expect = 3e-15
Identities = 204/305 (67%), Gaps = 0/305 (0%)
Strand=Plus/Minus
Query 16759 ACCAACTGATCGCAGCGCTGCGCAATCTGGTAGAGCGCGTATCGGTTTAGCATTTGCGGT 16818
|||||||| ||||| ||| || || |||| ||| | | || | ||| |||
Sbjct 12148 ACCAACTGGTCGCAATACTGTGCGATTCGGTAAAGCTCCCACTTGTCCACCATCCACGGC 12089
Query 16819 TTGATACGCCGACCGAGGCCGAAGCGCTCAGTAATACAAATATCGTACCAGTGCCACGCA 16878
||||| || || || || || || || || | || || |||| | ||| ||
Sbjct 12088 TTGATGCGGCGGCCCAGACCAAAACGGTCTTGGGTGCAGATGCCGTAGGTGATCCAGGCC 12029
Query 16879 GGGTTATCCGTCCATGCGCGTTTAAACGTGCCGTCCCAGTCCCCGGAATAGGTATGATTA 16938
||||||| ||||| || ||| | |||||||||||| | ||||| ||||| |
Sbjct 12028 GGGTTATTGGTCCAGGCCTCTTTCATGGTGCCGTCCCAGGCGCCGGAGTAGGTGCGGGCC 11969
Query 16939 ATCGGGTCGTAGTTGTTCGGTATTAGAACTTTGCGGCCTTTGCACTTGATGGACACGCGC 16998
| ||| ||||||||| |||| | | ||| | || ||||| | || |||| |
Sbjct 11968 ACCGGATCGTAGTTGCTCGGCACCTGCCACCGGCGCGCCTTACACTTCACGGTCACGGCC 11909
Query 16999 GGGATGTTCTGGAACGCTTTGGCGTCGAACTCCACAAACAACAGCGCGGTTAGCGGGTAA 17058
|| |||||| |||| | |||||||||||| || |||| ||||||||| |||||
Sbjct 11908 GGAATGTTCGTGAACTGCTCGGCGTCGAACTCGACGAACAGCAGCGCGGTGTTTGGGTAG 11849
Query 17059 CGCAG 17063
|||||
Sbjct 11848 CGCAG 11844
>seq2800887
Length=235
Score = 80.6 bits (88), Expect = 7e-11
Identities = 97/132 (73%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 33514 GACGTTAAAGTCCATACCGATAATCAGCGTGTCGTCCGGCTGCACTTCTTCGGTGCTGGC 33573
|||||| |||||||||||||| | ||||| ||| | |||||||| ||| || |
Sbjct 229 GACGTTGAAGTCCATACCGATGAACAGCGGCTCGCCGGGCTGCACGGTGTCGAAGCACCC 170
Query 33574 GTTCTCCTCGCGGTTGAACATCTTGTACACCGCGCCCGACGTAAGGTTAACAAACAGGCC 33633
||| || ||||| | | | |||| | || |||||||||||||| || ||| ||||
Sbjct 169 GTTGAGCTTGCGGTCGTAAGCCGTGTAAATCGTTCCCGACGTAAGGTTGACGAACTGGCC 110
Query 33634 GTTCAGGTACGC 33645
|| ||||||||
Sbjct 109 CTTGAGGTACGC 98
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 139236529135776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |