Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031098.1 Length=40749 Score E Sequences producing significant alignments: (Bits) Value seq2991302 199 1e-46 seq274481 176 1e-39 seq2991231 174 4e-39 >seq2991302 Length=613 Score = 199 bits (220), Expect = 1e-46 Identities = 341/490 (70%), Gaps = 16/490 (3%) Strand=Plus/Minus Query 503 CTGAATGTGCCTCAGGCTAACTTCCTACAATTACCAAATAAATTTAGAGCGTTCGTTGCT 562 || || || || |||||| | ||||| | || | ||||| | ||||||||||| Sbjct 585 CTTAACGTTCCGCAGGCTCAGTTCCTCACGCTGCCTCACAAATTCCGTGCGTTCGTTGCC 526 Query 563 GGGTTTGGTTCAGGTAAAACATGGGTTGGTTGTTCAAGTCTTTGTGATAAG----TCTTG 618 ||||| || ||||| || || ||||| || ||||| | | || | |||| || || Sbjct 525 GGGTTCGGCTCAGGCAAGACCTGGGTGGGCTGTTC--GGCACTGAG-TAAGCACTTCATG 469 Query 619 GTCTTTCCC----TAAAGTTCCGTTGGGTTACTTTGCTCCAACGTATCCGCAGATCCGAG 674 | | ||| | || || ||| | |||| || || || || ||||||||||| | Sbjct 468 GAGTGGCCCGGCGTCAA----CGCTGGCT-ACTTCGCACCGACTTACCCGCAGATCCGGG 414 Query 675 ATATCTTTTTCCCTACGATTGATGAAGTAGCTTTCGATTGGGGATTGAAGACAAAGATCT 734 | ||||| | || || || ||||| || || | ||| ||||| | ||||| |||||| Sbjct 413 ACATCTTCTATCCGACCATGGATGAGGTGGCCTACGACTGGGGGCTCAAGACCAAGATCA 354 Query 735 ATGAATCTAACAAAGAAGTTGATCTTTACTATGGCCGCCAATATCGAAGCACAATTATTT 794 | | | ||| | || ||| | | ||| || || || || || |||| | |||| Sbjct 353 ACCAGGCGAACCACGAGGTTCACATCTACAGCGGTCGGCAGTACCGCGGCACTGTGATTT 294 Query 795 GCCGATCAATGGAAAAGCCCAATACTATTGTAGGTTTTAAGATTGGTCATGCGCTGATTG 854 |||| || ||||| || || | || ||||| ||||| ||||||||||| || ||| | | Sbjct 293 GCCGGTCGATGGAGAAACCGCAGACGATTGTCGGTTTCAAGATTGGTCACGCCCTGGTGG 234 Query 855 ATGAGCTTGATGTGATGACAAAGGTCAAGGCTCAACAAGCTTGGCGTAAGATCATTGCTC 914 |||||||||| || |||| |||||||||| || || ||||| ||||||||||| | Sbjct 233 ATGAGCTTGACGTACTGACTGCCATCAAGGCTCAGCAGGCCTGGCGCAAGATCATTGCCC 174 Query 915 GTATGCGATATAAACAAGCTGGTTTGTTGAACGGTATTGATGTTGCAACAACGCCAGAGG 974 ||||||| || || | | || || |||||| | || || | || ||||| || | Sbjct 173 GTATGCGCTACAACCTTCCGGGGCTGAAGAACGGCGTGGACGTCACCACGACGCCGGAAG 114 Query 975 GCTTTAAGTT 984 |||||||||| Sbjct 113 GCTTTAAGTT 104 >seq274481 Length=3169 Score = 176 bits (194), Expect = 1e-39 Identities = 246/345 (71%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 641 GGTTACTTTGCTCCAACGTATCCGCAGATCCGAGATATCTTTTTCCCTACGATTGATGAA 700 || ||||| ||||| || ||| | |||||||| || ||||| | ||| || || || || Sbjct 1953 GGCTACTTCGCTCCGACCTATGCCCAGATCCGCGACATCTTCTACCCGACTATGGAAGAG 1894 Query 701 GTAGCTTTCGATTGGGGATTGAAGACAAAGATCTATGAATCTAACAAAGAAGTTGATCTT 760 || || || ||||| | || ||||| || | || ||| | ||||| | | Sbjct 1893 GTGGCGCAAGACTGGGGCCTTCGCACTGAGATCAATCAGTCGAACCATGAAGTGCACGTC 1834 Query 761 TACTATGGCCGCCAATATCGAAGCACAATTATTTGCCGATCAATGGAAAAGCCCAATACT 820 ||| |||||| ||||| || |||| | || |||||||| ||||| ||||| | || Sbjct 1833 TACAGTGGCCGGCAATACCGCGGCACTGTGATATGCCGATCCATGGAGAAGCCTCAGACA 1774 Query 821 ATTGTAGGTTTTAAGATTGGTCATGCGCTGATTGATGAGCTTGATGTGATGACAAAGGTC 880 || || ||||| ||||||||||| |||||| | |||||||| || ||||||| |||| Sbjct 1773 ATCGTCGGTTTCAAGATTGGTCACGCGCTGGTCGATGAGCTCGACGTGATGAGCTTGGTC 1714 Query 881 AAGGCTCAACAAGCTTGGCGTAAGATCATTGCTCGTATGCGATATAAACAAGCTGGTTTG 940 ||||| || || || ||||| |||||||| || || ||||| || || | || ||| Sbjct 1713 AAGGCGCAGCAGGCCTGGCGCAAGATCATCGCCCGGATGCGCTACAACGCCCCAGGCTTG 1654 Query 941 TTGAACGGTATTGATGTTGCAACAACGCCAGAGGGCTTTAAGTTC 985 ||||| | || || | || || |||||||||| |||||| Sbjct 1653 CGCAACGGGGTGGACGTAACGACGACCCCAGAGGGCTACAAGTTC 1609 >seq2991231 Length=613 Score = 174 bits (192), Expect = 4e-39 Identities = 336/491 (68%), Gaps = 16/491 (3%) Strand=Plus/Minus Query 503 CTGAATGTGCCTCAGGCTAACTTCCTACAATTACCAAATAAATTTAGAGCGTTCGTTGCT 562 || || || || |||||| | ||||| | || ||||||| | ||||||||||| Sbjct 585 CTTAACGTTCCGCAGGCTCAGTTCCTCACGCTGCCCCATAAATTCCGTGCGTTCGTTGCC 526 Query 563 GGGTTTGGTTCAGGTAAAACATGGGTTGGTTGTTCAAGTCTTTGTGATAAG----TCTTG 618 || || || ||||| || || ||||| || ||||| | | || | ||| || || Sbjct 525 GGTTTCGGATCAGGCAAGACCTGGGTGGGCTGTTC--GGCACTGAGC-AAGCATTTCATG 469 Query 619 GTCTTTCCC----TAAAGTTCCGTTGGGTTACTTTGCTCCAACGTATCCGCAGATCCGAG 674 | | || | || || ||| | |||| || || || || ||||||||||| | Sbjct 468 GAGTGGCCGGGCGTCAA----CGCTGGAT-ACTTCGCACCGACATACCCGCAGATCCGGG 414 Query 675 ATATCTTTTTCCCTACGATTGATGAAGTAGCTTTCGATTGGGGATTGAAGACAAAGATCT 734 | || || | || || || ||||| || || | ||| ||||| ||||||| |||||| Sbjct 413 ACATTTTCTATCCGACCATGGATGAGGTTGCCTACGACTGGGGGCTGAAGACCAAGATCA 354 Query 735 ATGAATCTAACAAAGAAGTTGATCTTTACTATGGCCGCCAATATCGAAGCACAATTATTT 794 | | | ||| | || ||| | | ||| ||||| || || || |||| | |||| Sbjct 353 ACCAGGCGAACCACGAGGTTCACATCTACAGCGGCCGGCAGTACCGCGGCACCGTGATTT 294 Query 795 GCCGATCAATGGAAAAGCCCAATACTATTGTAGGTTTTAAGATTGGTCATGCGCTGATTG 854 |||| || ||||| ||||| | || ||||| ||||| || || || || || || | | Sbjct 293 GCCGGTCGATGGAGAAGCCGCAGACGATTGTCGGTTTCAAAATCGGCCAAGCTCTTGTGG 234 Query 855 ATGAGCTTGATGTGATGACAAAGGTCAAGGCTCAACAAGCTTGGCGTAAGATCATTGCTC 914 ||||||| || ||| |||| |||||||| || || |||||||| |||||||| || | Sbjct 233 ATGAGCTGGACGTGCTGACCGCAGTCAAGGCGCAGCAGGCTTGGCGCAAGATCATCGCCC 174 Query 915 GTATGCGATATAAACAAGCTGGTTTGTTGAACGGTATTGATGTTGCAACAACGCCAGAGG 974 | ||||| || || | | || || |||||| | || || | || ||||| || | Sbjct 173 GGATGCGCTACAACTTACCCGGGCTGAAGAACGGGGTGGACGTCACCACGACGCCGGAAG 114 Query 975 GCTTTAAGTTC 985 |||| |||||| Sbjct 113 GCTTCAAGTTC 103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125497217889802