Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_031098.1
Length=40749
Score E
Sequences producing significant alignments: (Bits) Value
seq2991302 199 1e-46
seq274481 176 1e-39
seq2991231 174 4e-39
>seq2991302
Length=613
Score = 199 bits (220), Expect = 1e-46
Identities = 341/490 (70%), Gaps = 16/490 (3%)
Strand=Plus/Minus
Query 503 CTGAATGTGCCTCAGGCTAACTTCCTACAATTACCAAATAAATTTAGAGCGTTCGTTGCT 562
|| || || || |||||| | ||||| | || | ||||| | |||||||||||
Sbjct 585 CTTAACGTTCCGCAGGCTCAGTTCCTCACGCTGCCTCACAAATTCCGTGCGTTCGTTGCC 526
Query 563 GGGTTTGGTTCAGGTAAAACATGGGTTGGTTGTTCAAGTCTTTGTGATAAG----TCTTG 618
||||| || ||||| || || ||||| || ||||| | | || | |||| || ||
Sbjct 525 GGGTTCGGCTCAGGCAAGACCTGGGTGGGCTGTTC--GGCACTGAG-TAAGCACTTCATG 469
Query 619 GTCTTTCCC----TAAAGTTCCGTTGGGTTACTTTGCTCCAACGTATCCGCAGATCCGAG 674
| | ||| | || || ||| | |||| || || || || ||||||||||| |
Sbjct 468 GAGTGGCCCGGCGTCAA----CGCTGGCT-ACTTCGCACCGACTTACCCGCAGATCCGGG 414
Query 675 ATATCTTTTTCCCTACGATTGATGAAGTAGCTTTCGATTGGGGATTGAAGACAAAGATCT 734
| ||||| | || || || ||||| || || | ||| ||||| | ||||| ||||||
Sbjct 413 ACATCTTCTATCCGACCATGGATGAGGTGGCCTACGACTGGGGGCTCAAGACCAAGATCA 354
Query 735 ATGAATCTAACAAAGAAGTTGATCTTTACTATGGCCGCCAATATCGAAGCACAATTATTT 794
| | | ||| | || ||| | | ||| || || || || || |||| | ||||
Sbjct 353 ACCAGGCGAACCACGAGGTTCACATCTACAGCGGTCGGCAGTACCGCGGCACTGTGATTT 294
Query 795 GCCGATCAATGGAAAAGCCCAATACTATTGTAGGTTTTAAGATTGGTCATGCGCTGATTG 854
|||| || ||||| || || | || ||||| ||||| ||||||||||| || ||| | |
Sbjct 293 GCCGGTCGATGGAGAAACCGCAGACGATTGTCGGTTTCAAGATTGGTCACGCCCTGGTGG 234
Query 855 ATGAGCTTGATGTGATGACAAAGGTCAAGGCTCAACAAGCTTGGCGTAAGATCATTGCTC 914
|||||||||| || |||| |||||||||| || || ||||| ||||||||||| |
Sbjct 233 ATGAGCTTGACGTACTGACTGCCATCAAGGCTCAGCAGGCCTGGCGCAAGATCATTGCCC 174
Query 915 GTATGCGATATAAACAAGCTGGTTTGTTGAACGGTATTGATGTTGCAACAACGCCAGAGG 974
||||||| || || | | || || |||||| | || || | || ||||| || |
Sbjct 173 GTATGCGCTACAACCTTCCGGGGCTGAAGAACGGCGTGGACGTCACCACGACGCCGGAAG 114
Query 975 GCTTTAAGTT 984
||||||||||
Sbjct 113 GCTTTAAGTT 104
>seq274481
Length=3169
Score = 176 bits (194), Expect = 1e-39
Identities = 246/345 (71%), Gaps = 0/345 (0%)
Strand=Plus/Minus
Query 641 GGTTACTTTGCTCCAACGTATCCGCAGATCCGAGATATCTTTTTCCCTACGATTGATGAA 700
|| ||||| ||||| || ||| | |||||||| || ||||| | ||| || || || ||
Sbjct 1953 GGCTACTTCGCTCCGACCTATGCCCAGATCCGCGACATCTTCTACCCGACTATGGAAGAG 1894
Query 701 GTAGCTTTCGATTGGGGATTGAAGACAAAGATCTATGAATCTAACAAAGAAGTTGATCTT 760
|| || || ||||| | || ||||| || | || ||| | ||||| | |
Sbjct 1893 GTGGCGCAAGACTGGGGCCTTCGCACTGAGATCAATCAGTCGAACCATGAAGTGCACGTC 1834
Query 761 TACTATGGCCGCCAATATCGAAGCACAATTATTTGCCGATCAATGGAAAAGCCCAATACT 820
||| |||||| ||||| || |||| | || |||||||| ||||| ||||| | ||
Sbjct 1833 TACAGTGGCCGGCAATACCGCGGCACTGTGATATGCCGATCCATGGAGAAGCCTCAGACA 1774
Query 821 ATTGTAGGTTTTAAGATTGGTCATGCGCTGATTGATGAGCTTGATGTGATGACAAAGGTC 880
|| || ||||| ||||||||||| |||||| | |||||||| || ||||||| ||||
Sbjct 1773 ATCGTCGGTTTCAAGATTGGTCACGCGCTGGTCGATGAGCTCGACGTGATGAGCTTGGTC 1714
Query 881 AAGGCTCAACAAGCTTGGCGTAAGATCATTGCTCGTATGCGATATAAACAAGCTGGTTTG 940
||||| || || || ||||| |||||||| || || ||||| || || | || |||
Sbjct 1713 AAGGCGCAGCAGGCCTGGCGCAAGATCATCGCCCGGATGCGCTACAACGCCCCAGGCTTG 1654
Query 941 TTGAACGGTATTGATGTTGCAACAACGCCAGAGGGCTTTAAGTTC 985
||||| | || || | || || |||||||||| ||||||
Sbjct 1653 CGCAACGGGGTGGACGTAACGACGACCCCAGAGGGCTACAAGTTC 1609
>seq2991231
Length=613
Score = 174 bits (192), Expect = 4e-39
Identities = 336/491 (68%), Gaps = 16/491 (3%)
Strand=Plus/Minus
Query 503 CTGAATGTGCCTCAGGCTAACTTCCTACAATTACCAAATAAATTTAGAGCGTTCGTTGCT 562
|| || || || |||||| | ||||| | || ||||||| | |||||||||||
Sbjct 585 CTTAACGTTCCGCAGGCTCAGTTCCTCACGCTGCCCCATAAATTCCGTGCGTTCGTTGCC 526
Query 563 GGGTTTGGTTCAGGTAAAACATGGGTTGGTTGTTCAAGTCTTTGTGATAAG----TCTTG 618
|| || || ||||| || || ||||| || ||||| | | || | ||| || ||
Sbjct 525 GGTTTCGGATCAGGCAAGACCTGGGTGGGCTGTTC--GGCACTGAGC-AAGCATTTCATG 469
Query 619 GTCTTTCCC----TAAAGTTCCGTTGGGTTACTTTGCTCCAACGTATCCGCAGATCCGAG 674
| | || | || || ||| | |||| || || || || ||||||||||| |
Sbjct 468 GAGTGGCCGGGCGTCAA----CGCTGGAT-ACTTCGCACCGACATACCCGCAGATCCGGG 414
Query 675 ATATCTTTTTCCCTACGATTGATGAAGTAGCTTTCGATTGGGGATTGAAGACAAAGATCT 734
| || || | || || || ||||| || || | ||| ||||| ||||||| ||||||
Sbjct 413 ACATTTTCTATCCGACCATGGATGAGGTTGCCTACGACTGGGGGCTGAAGACCAAGATCA 354
Query 735 ATGAATCTAACAAAGAAGTTGATCTTTACTATGGCCGCCAATATCGAAGCACAATTATTT 794
| | | ||| | || ||| | | ||| ||||| || || || |||| | ||||
Sbjct 353 ACCAGGCGAACCACGAGGTTCACATCTACAGCGGCCGGCAGTACCGCGGCACCGTGATTT 294
Query 795 GCCGATCAATGGAAAAGCCCAATACTATTGTAGGTTTTAAGATTGGTCATGCGCTGATTG 854
|||| || ||||| ||||| | || ||||| ||||| || || || || || || | |
Sbjct 293 GCCGGTCGATGGAGAAGCCGCAGACGATTGTCGGTTTCAAAATCGGCCAAGCTCTTGTGG 234
Query 855 ATGAGCTTGATGTGATGACAAAGGTCAAGGCTCAACAAGCTTGGCGTAAGATCATTGCTC 914
||||||| || ||| |||| |||||||| || || |||||||| |||||||| || |
Sbjct 233 ATGAGCTGGACGTGCTGACCGCAGTCAAGGCGCAGCAGGCTTGGCGCAAGATCATCGCCC 174
Query 915 GTATGCGATATAAACAAGCTGGTTTGTTGAACGGTATTGATGTTGCAACAACGCCAGAGG 974
| ||||| || || | | || || |||||| | || || | || ||||| || |
Sbjct 173 GGATGCGCTACAACTTACCCGGGCTGAAGAACGGGGTGGACGTCACCACGACGCCGGAAG 114
Query 975 GCTTTAAGTTC 985
|||| ||||||
Sbjct 113 GCTTCAAGTTC 103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 125497217889802
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |