Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031113.1 Length=44513 Score E Sequences producing significant alignments: (Bits) Value seq3088451 100 8e-17 >seq3088451 Length=13260 Score = 100 bits (110), Expect = 8e-17 Identities = 205/305 (67%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 38271 CTGCGTTACCCGCTAACCGCGCTGTTGTTTGTGGAGTTCGACGCCAAAGCGTTCCAGAAC 38330 ||||| ||||| ||||||||| |||| || |||||||||||| | |||| |||| Sbjct 11844 CTGCGCTACCCAAACACCGCGCTGCTGTTCGTCGAGTTCGACGCCGAGCAGTTCACGAAC 11903 Query 38331 ATCCCGCGCGTGTCCATCAAGTGCAAAGGCCGCAAAGTTCTAATACCGAACAACTACGAC 38390 || ||| |||| || | ||||| || | ||| | | |||| ||||||||| Sbjct 11904 ATTCCGGCCGTGACCGTGAAGTGTAAGGCGCGCCGGTGGCAGGTGCCGAGCAACTACGAT 11963 Query 38391 CCGATTAATCATACCTATTCCGGGGACTGGGACGGCACGTTTAAACGCGCATGGACGGAT 38450 ||| | | ||||| ||||| | |||||||||||| | ||| || ||||| || Sbjct 11964 CCGGTGGCCCGCACCTACTCCGGCGCCTGGGACGGCACCATGAAAGAGGCCTGGACCAAT 12023 Query 38451 AACCCTGCGTGGCACTGGTACGATATTTGTATTACTGAGCGCTTCGGCCTCGGTCGGCGT 38510 ||||| || ||| | |||| || || | || || || || || || || || Sbjct 12024 AACCCGGCCTGGATCACCTACGGCATCTGCACCCAAGACCGTTTTGGTCTGGGCCGCCGC 12083 Query 38511 ATCAAACCGCAAATGTTAAACCGGTACGCGCTCTACCAGATTGCGCAGCGCTGCGATCAG 38570 ||||| ||| ||| | || || | ||| |||| || || ||| ||||| ||| Sbjct 12084 ATCAAGCCGTGGATGGTGGACAAGTGGGAGCTTTACCGAATCGCACAGTATTGCGACCAG 12143 Query 38571 TTGGT 38575 ||||| Sbjct 12144 TTGGT 12148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137100261984450