Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq3079416 100 4e-16 seq2871653 93.3 6e-14 >seq3079416 Length=2120 Score = 100 bits (110), Expect = 4e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 196123 ACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCC 196182 ||||| | | || ||||||||| | |||||||| || ||||| | | ||| | Sbjct 1338 ACCTGGCCGACGGCTTCCCGCTGCTGACCACCAAGAAACTGCACTTCAAAAGCATCGCCA 1279 Query 196183 ACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACG 196242 |||| ||| | ||| | ||| |||| ||||||| ||| ||| || || || ||| || Sbjct 1278 ACGAGCTGATCTGGATGTTGAGCGGCAACACCAATATCAAGTGGCTTAACGAAAACGGCG 1219 Query 196243 TCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGC 196302 | | ||||||||||| ||||| ||||| ||||| || ||||| || ||||| ||| Sbjct 1218 TGCGCATCTGGGATGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGC 1159 Query 196303 AGTGG 196307 ||||| Sbjct 1158 AGTGG 1154 >seq2871653 Length=292 Score = 93.3 bits (102), Expect = 6e-14 Identities = 127/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 196134 GGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGC-GATCTATCATCCACGAACTGTT 196192 || ||||||||| | |||||||| ||| | || | || | ||| | |||||||| | Sbjct 26 GGCTTCCCGCTGCTGACCACCAAGAAGCTTCATTTCAAGAGC-ATCGCCAACGAACTGAT 84 Query 196193 GTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 196252 ||| | ||| ||| ||||||||||| ||| || || || ||| ||| | ||||| Sbjct 85 CTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTCAACGAAAACGGCGTGAAAATCTG 144 Query 196253 GGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGG 196307 ||| || ||||| ||||| ||||| || ||||| || ||||| |||||||| Sbjct 145 GGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740568421742760