Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031230.1 Length=98136 Score E Sequences producing significant alignments: (Bits) Value seq2955700 89.7 3e-13 >seq2955700 Length=463 Score = 89.7 bits (98), Expect = 3e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 46299 CGCCAGTCTGCCATTCATCTACCCCCACGTTGCGCTGATGCCAGATGCTCACGCAGGCAA 46358 ||||| |||| || |||| | ||| | ||| ||||||| |||| ||| ||||| Sbjct 438 CGCCAAGATGCCGTTTATCTTCAAGCACCTCGCGGTGATGCCGGATGTGCACCTGGGCAA 379 Query 46359 GGGGTCTGCCGTGGGCACGGTGATCCCCACCAAGGACGCCGTCATCCCAGCGGCCGTGGG 46418 ||| || || | |||| || |||||||| || ||| | ||||| ||||| ||||| Sbjct 378 GGGTTCGACCATCGGCAGCGTAATCCCCACGGTGGGCGCGATTATCCCGGCGGCGGTGGG 319 Query 46419 TGTCGACATCGGTTGCGGGATGAT 46442 || |||||||| ||||||||||| Sbjct 318 CGTGGACATCGGCTGCGGGATGAT 295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 302094427120887