Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq1030616 89.7 6e-13 seq144353 89.7 6e-13 >seq1030616 Length=115 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19746 CATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCG 19805 |||||| | |||||||||| |||||||| | ||||||||||||| | |||||||||||| Sbjct 36 CATTCCGCGATAGCTCAGTTGGTAGAGCAAATGACTGTTAATCATTGGGTCCCTGGTTCG 95 Query 19806 AGCCCAGGTGGAGGAGC 19822 || |||||| | ||||| Sbjct 96 AGTCCAGGTCGTGGAGC 112 >seq144353 Length=33745 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19746 CATTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCG 19805 |||||| | |||||||||| |||||||| | ||||||||||||| | |||||||||||| Sbjct 32852 CATTCCGCGATAGCTCAGTTGGTAGAGCAAATGACTGTTAATCATTGGGTCCCTGGTTCG 32793 Query 19806 AGCCCAGGTGGAGGAGC 19822 || |||||| | ||||| Sbjct 32792 AGTCCAGGTCGTGGAGC 32776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 598054509085320