Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031253.1 Length=77832 Score E Sequences producing significant alignments: (Bits) Value seq322084 95.1 6e-15 >seq322084 Length=21621 Score = 95.1 bits (104), Expect = 6e-15 Identities = 130/179 (73%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 28481 TTCAACGCACAGGTCGGTCACGAATC-GGCCGGCCTGCTGTACATGTCGGAAATCTGGGG 28539 |||| || |||||||| || || || |||| || ||| ||| || || |||||||| Sbjct 13129 TTCATTGCCCAGGTCGGGCATGAGTCTGGCCAGC-TGCGTTACGTGCGCGAGATCTGGGG 13187 Query 28540 ACCGACTGCCGCGCAATGCGGTTACGAGTGGCGTACCGACCTGGGCAACACCGTCGCGGG 28599 || || ||| |||| ||| || || | ||| | ||||||||||||||||| ||| Sbjct 13188 GCCAACCGCCCAGCAACTCGGCTATGAAGGCCGTGCTGACCTGGGCAACACCGTAAAGGG 13247 Query 28600 TGACGGCTACCGGTTCCGAGGCCGCGGCCCCCTGCAGGTGACGGGCCGGGGCCACTACA 28658 |||||||| | |||||| || || |||| | ||| | || ||||||| | | |||| Sbjct 13248 TGACGGCTCCAAGTTCCGTGGGCGTGGCCTGATCCAGATCACCGGCCGGGCCAATTACA 13306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 239567283087303