Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq300236 145 2e-29
seq66256 120 7e-22
seq185925 102 2e-16
seq155098 102 2e-16
seq2409662 91.5 3e-13
seq2452699 84.2 5e-11
>seq300236
Length=7644
Score = 145 bits (160), Expect = 2e-29
Identities = 168/225 (75%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943
||||| | |||||| || || ||||| |||||||| ||||||||||| || | | ||
Sbjct 7634 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTG 7575
Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
| ||||||||| || |||||| || ||||| | |||||||||||| | | ||| ||
Sbjct 7574 CGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCC 7515
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060
|| |||||||| || || |||||| |||| | | |||| ||| ||| || ||
Sbjct 7514 TCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCC 7458
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105
||||| || ||||| || ||||| ||||| || |||| |||||||
Sbjct 7457 AGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 7413
>seq66256
Length=6617
Score = 120 bits (132), Expect = 7e-22
Identities = 158/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || ||||||| |||||||||||||| | | ||| | ||||||
Sbjct 1628 AGGACCAGGTGCAGGGTCTACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1569
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || | ||| ||||| |||||||||||||| | | || |||||||| ||
Sbjct 1568 TCCAGCTGCTTGCTGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 1509
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || || |||| | | |||| ||| |||||| || || || ||
Sbjct 1508 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCTACCTCCAGGGTGATG 1452
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| ||||| || || ||||||||||||| ||||||||
Sbjct 1451 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 1414
>seq185925
Length=7279
Score = 102 bits (112), Expect = 2e-16
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | || ||||||||||| ||||| ||||| |||||||| || | |||||
Sbjct 299 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGT 358
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| || || || || |||| | || |||||||| | | |||||||||
Sbjct 359 CCATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCC 418
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| || || || || || ||| | |||| | || | || || ||||||||
Sbjct 419 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAGTG 478
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || ||||| || ||||||| ||| | |||||| ||
Sbjct 479 ATGGTCTTCCCCGTCAGGGTCTTCATGAAAATCTGCATCTT 519
>seq155098
Length=7669
Score = 102 bits (112), Expect = 2e-16
Identities = 155/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | || ||||||||||| ||||| ||||| ||| |||| || | ||||| |
Sbjct 7220 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGT 7279
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
||||||| || || || || ||||| || | |||||||| | | |||||||||
Sbjct 7280 TCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCC 7339
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| || || || || || ||| | |||| | || || || || || |||||
Sbjct 7340 TTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTG 7399
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || ||||| || |||||||| || | |||||| ||
Sbjct 7400 ATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTT 7440
>seq2409662
Length=152
Score = 91.5 bits (100), Expect = 3e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || |||||||| |||||||||||||| | | ||| | ||||||
Sbjct 16 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 75
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||| ||||| |||||||||||||| | | || |||||||| ||
Sbjct 76 TCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 135
Query 152013 TGAATTTT 152020
|| || ||
Sbjct 136 TGGATCTT 143
>seq2452699
Length=160
Score = 84.2 bits (92), Expect = 5e-11
Identities = 104/141 (74%), Gaps = 6/141 (4%)
Strand=Plus/Minus
Query 151967 GGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTT 152026
||| ||||| |||||||||||||| | | || |||||||| || || || || ||
Sbjct 160 GGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTT 101
Query 152027 GACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAG 152083
||| |||| | | |||| ||| ||| || || ||||| || || ||||| || ||
Sbjct 100 CACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAG 44
Query 152084 AGTCTTCACGAAGACCTGCAT 152104
||||||||||||| ||||||
Sbjct 43 GGTCTTCACGAAGATCTGCAT 23
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1108162325766881
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |