Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq2799564 80.6 8e-11 >seq2799564 Length=235 Score = 80.6 bits (88), Expect = 8e-11 Identities = 99/133 (74%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 36542 GCCTTCGATGTAAACCTGCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCAAGTTT 36601 ||||||||||||||||||||||||||| || ||||| || || || | || |||| || Sbjct 184 GCCTTCGATGTAAACCTGCGAACCTTTGCGCAGGTACTCGCCGGCGATCTCTGCAACCTT 125 Query 36602 CCCGAATAT-GACAATACGATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGCTTAT 36660 ||||| || ||| | || ||||| || || | || ||| | || |||||||| | Sbjct 124 GCCGAACATCGAC-ACGCGGTGCCATTCGGTTTTCTCGACCTTCTGGCCGGTCTGCTTGT 66 Query 36661 CTTTCCACTGCTC 36673 | ||||||| || Sbjct 65 CAGTCCACTGTTC 53 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146505386196132