Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq142543 111 2e-19 seq85459 91.5 1e-13 seq28392 87.8 2e-12 seq179379 86.0 6e-12 >seq142543 Length=7870 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 6767 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCT 6826 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| |||||||| |||||||| || || ||||| ||||||| Sbjct 6827 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 6886 Query 23651 CCAC 23654 |||| Sbjct 6887 CCAC 6890 >seq85459 Length=10496 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 23544 AATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATAT 23603 ||| | |||||| ||||| || | || ||||||| ||||||||| || | ||| ||||| Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884 Query 23604 TGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGT 23661 | ||||| || ||||||||||| || || || || || |||||||| || | |||| Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACCACACGT 8826 Score = 86.0 bits (94), Expect = 6e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| | || || |||||||| || | |||||||||||||||||| || ||||| || || Sbjct 6860 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 6801 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTC 23861 ||| || || ||||| ||||||| ||||| Sbjct 6800 AATTTGGAAGCCATAGAAACATCGGGCTTC 6771 >seq28392 Length=738 Score = 87.8 bits (96), Expect = 2e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||| ||||| || | || ||||| || ||||| | |||| | ||||| || | Sbjct 265 CAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTAATAAGTTCACTGGAAAACGTGAGG 324 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 || ||||| | ||||||||| || | ||| ||||| | ||||| || ||||||||||| Sbjct 325 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGACGCAAAAGAACCGGAAAAGAAG 384 Query 23629 ATACCCTCAAC 23639 || || || || Sbjct 385 ATGCCTTCCAC 395 >seq179379 Length=29316 Score = 86.0 bits (94), Expect = 6e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 8387 GCTCACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTA 8446 || ||||||| || ||| |||||||||| || |||| |||||||||||| ||||| Sbjct 22829 GCGCACTGCAGCCCAGAACTCTTGGGTTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTA 22888 Query 8447 GCTGGGATTACAGGCAAAAGCCACCACGCC 8476 ||||||| ||||||| | ||||||||||| Sbjct 22889 GCTGGGACTACAGGCGCATGCCACCACGCC 22918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501355232195400