Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq300236 138 8e-28
seq66256 129 4e-25
seq155098 118 7e-22
seq185925 107 1e-18
seq2452699 82.4 5e-11
>seq300236
Length=7644
Score = 138 bits (152), Expect = 8e-28
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || ||||| || | | |||||||| || ||| ||| || ||||||||||| ||
Sbjct 7644 CATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 7585
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
| || |||| | || |||||||| ||||| ||||||||||| | |||||| ||||
Sbjct 7584 AGAAAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGG 7525
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286
||| | || || ||||| ||||||| ||| | | | |||||||| || ||
Sbjct 7524 AGGGATGCCCTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTC 7465
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||||||| || || || || || ||||||||||| || ||||| |||||
Sbjct 7464 CACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 7414
>seq66256
Length=6617
Score = 129 bits (142), Expect = 4e-25
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || || ||| || |||||||||||||| | || ||| | || |||
Sbjct 1625 ACCAGGTGCAGGGTCTACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1566
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| | ||||||||| | | |||||| || | || | |||||||| |||
Sbjct 1565 AGCTGCTTGCTGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1506
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||||| |||| | |||||||| || || ||||||| || || |||||
Sbjct 1505 ATCTTGGCCTTCAC-GTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTT 1447
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || |||||||||||||||||||||||
Sbjct 1446 GCCGGTCAGGGTCTTCACGAAGATTTGCAT 1417
>seq155098
Length=7669
Score = 118 bits (130), Expect = 7e-22
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||||||| || ||||| ||| ||||||||| ||| |||| || | | ||
Sbjct 7220 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGT 7279
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
|| || ||||| ||||| || |||||||||| ||||| || | ||| | ||||||
Sbjct 7280 TCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCC 7339
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||| | || |||| || || | || ||| ||||| | ||
Sbjct 7340 TTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTG 7399
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| ||||||||||| || || |||||
Sbjct 7400 ATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 7437
>seq185925
Length=7279
Score = 107 bits (118), Expect = 1e-18
Identities = 158/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGT-TGG 44176
||||||||||| || ||||| ||| ||||||||| |||||||| || | ||| ||
Sbjct 299 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGT 358
Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236
| | || ||||| ||||| || ||| ||||| | ||||| || | ||| | |||
Sbjct 359 C---CATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCT 415
Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACC 44296
||||| ||| ||||| ||| | || |||| || || || ||| ||||| |
Sbjct 416 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGA 475
Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || ||||| ||||| |||||||||| ||| || |||||
Sbjct 476 GTGATGGTCTTCCCCGTCAGGGTCTTCATGAAAATCTGCAT 516
>seq2452699
Length=160
Score = 82.4 bits (90), Expect = 5e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 44200 GGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT 44259
||||||||| | | |||||| || | || | |||||||| ||| ||||| |||
Sbjct 160 GGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTT 101
Query 44260 CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGT 44319
|| | | |||||||| || |||||||||| || || ||||| || || |||||
Sbjct 100 CACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGT 41
Query 44320 CTTCACGAAGATTTGCAT 44337
|||||||||||| |||||
Sbjct 40 CTTCACGAAGATCTGCAT 23
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346439919343287
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |