Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq324775 179 5e-40
seq185621 87.8 2e-12
>seq324775
Length=12802
Score = 179 bits (198), Expect = 5e-40
Identities = 177/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||||| ||||| || | |||||||||||| |||||||| || ||||| |||||
Sbjct 7367 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 7308
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||||||||||| ||||| || ||||| |||||||| || ||||| ||||| |||||
Sbjct 7307 CTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 7248
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|||| || || ||||| | || || ||| || || | || || |||||||| |
Sbjct 7247 ACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGTGGGTAGATCATTTCG 7188
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
||||| |||||||| | ||| |||||||| || || | ||||||||
Sbjct 7187 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 7139
Score = 147 bits (162), Expect = 3e-30
Identities = 215/304 (71%), Gaps = 0/304 (0%)
Strand=Plus/Minus
Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342
|||| | ||| | || || ||||| || || ||||| | |||| ||||||||||| |
Sbjct 9047 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTG 8988
Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402
|| | |||| ||| || || || ||||| || || ||||| ||||||||||||
Sbjct 8987 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACT 8928
Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462
| || || || || || |||| || ||||| |||||||| || || || || |
Sbjct 8927 CGGGAGAACATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGCGCTCCAGCTTCTA 8868
Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522
||| |||| || |||||||||| ||||| ||||| || |||| | ||| ||||
Sbjct 8867 CCATGGTCTCCCCAAAGATGGCGTCTGGACGAGGCTTCTCTACCAGAAGGGCGGGATACA 8808
Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582
|||||| || || | ||||||||| || || | || ||||| || ||||| ||||
Sbjct 8807 GCTCCATGGCATCTATGTCTCCGTAGAGTGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 8748
Query 8583 CTGT 8586
||||
Sbjct 8747 CTGT 8744
Score = 111 bits (122), Expect = 2e-19
Identities = 120/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| | ||| |||||||| || || ||||| | ||||| ||| | ||
Sbjct 6349 TCTTACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 6290
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
|||||| || ||||| || ||| |||| || |||||||| | || ||||| ||||||||
Sbjct 6289 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATC 6230
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807
||| |||| | || | ||||| ||||| ||||||
Sbjct 6229 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAAC 6191
>seq185621
Length=19746
Score = 87.8 bits (96), Expect = 2e-12
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291
|| ||||| | |||||| || | |||||||| || || || || | ||| || ||
Sbjct 18080 TCACCGATGAGGATGAGGCGGGCCGTCTGGAAGAGCTGTTCATCTCCCCAGGTGGGGTGC 18139
Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351
|| ||||| | || ||||| | |||||| || | |||||||| |||||||| | |
Sbjct 18140 TCAGCCTTCAGCAGGTCACACACGCGGTTGTGCTCACGCAGCCAGATGGTGGCGTAGAGC 18199
Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394
||||||||||| | ||| ||||| | || || || || ||||
Sbjct 18200 ATGAGCCCAGGAAGCAGCCCAAACACTTCCTGGCCCACGGCCA 18242
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 689200776469440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |