Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq66256 150 4e-31 seq1887490 95.1 3e-14 seq2340502 93.3 1e-13 seq1715084 91.5 3e-13 seq1559739 91.5 3e-13 seq2452699 89.7 1e-12 seq136426 86.0 1e-11 >seq66256 Length=6617 Score = 150 bits (166), Expect = 4e-31 Identities = 168/222 (76%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| |||||||| || || || || || || |||||||| |||| Sbjct 1409 AGGTCAAAATGC---AAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 1465 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 | || || ||| |||||||||||||||| || ||||| ||||| || ||||| || Sbjct 1466 TAGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 1523 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| ||| | || ||||| |||||||| | ||||| Sbjct 1524 TCCCCCTGACCAGCAGAGGCTCATCTTTGCCAGCAAGCAGCTGGAAGATGGCCGCACTCT 1583 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| ||||| | || ||||| || || Sbjct 1584 TTCTGATTACAACATCCAGAAAGAGTAGACCCTGCACCTGGT 1625 >seq1887490 Length=127 Score = 95.1 bits (104), Expect = 3e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||||||||| ||||| ||||| || |||||||| || ||||| || |||||||| Sbjct 1 CACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCA 60 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || | ||||| || || |||||||| |||||||| | || || | || || ||| | Sbjct 61 GAGATTGATCTTTGCAGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACAT 120 Query 178103 CCAAAAA 178109 ||| ||| Sbjct 121 CCAGAAA 127 >seq2340502 Length=142 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||| ||||| ||||| || |||||||| || ||||| || |||||| Sbjct 14 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 73 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | | ||||| || || |||||||| |||||||| | || || | || || ||| Sbjct 74 CAGAGGTTGATCTTTGCAGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 133 Query 178101 GTCCAAAAA 178109 |||| ||| Sbjct 134 ATCCAGAAA 142 >seq1715084 Length=127 Score = 91.5 bits (100), Expect = 3e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||| ||||| ||||| || |||||||| || ||||| ||||||||| Sbjct 11 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCGGACCAG 70 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || | | ||||| || || |||||||| |||||||| Sbjct 71 CAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGG 108 >seq1559739 Length=125 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || |||||||| || ||||| || |||||||| Sbjct 125 ACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAG 66 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || |||||||| |||||||| | || || | || || ||| || Sbjct 65 AGGCTGATCTTTGCAGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATC 6 Query 178104 CAAAA 178108 || || Sbjct 5 CAGAA 1 >seq2452699 Length=160 Score = 89.7 bits (98), Expect = 1e-12 Identities = 103/137 (75%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||| || |||||||| || ||| Sbjct 26 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGA--GCCCAGTG 83 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| ||||| || ||||| || || || ||||||| Sbjct 84 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGC 143 Query 178042 AACGACTTATCTTCGCC 178058 | | || ||||| ||| Sbjct 144 AGAGGCTCATCTTTGCC 160 >seq136426 Length=23094 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/210 (70%), Gaps = 14/210 (7%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||| |||| || | || || || || |||||||| |||||||| || ||| Sbjct 21081 CAGATCTTCATGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 21138 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC---CGGACC 178038 ||| ||||||||| | ||| ||||| || ||| || | ||| | |||||| Sbjct 21139 ACATCATCGAGAATGCCAAGGCCAAGATCCA------AGAGGGCACCCCCCACCCGGACC 21192 Query 178039 AGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATA 178098 |||| | | ||||| || || |||||||| |||||||| || || | || || | Sbjct 21193 AGCAGAGGTTGATCTTTGCAGGGAAACAGCTGGAAGATGGGCACACCCTGTCTGACTACA 21252 Query 178099 ACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || |||| ||||| || || ||||| |||| Sbjct 21253 ACATCCAGAAAGAGTCCACTCTGCA-CTTG 21281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1156097694018134