Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq8 105 5e-18 seq5 104 2e-17 >seq8 Length=46046909 Score = 105 bits (116), Expect = 5e-18 Identities = 192/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 19078 TCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAA 19137 |||||||||| | || || || || |||||||| | || || | || || || || Sbjct 12968662 TCAACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACACATCACCGGCCTGAAGC 12968603 Query 19138 CCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTT 19197 | || || || | ||||| |||| ||||||||||||||| ||||||| | || | Sbjct 12968602 CAGGTGACTTTGTACATACTTTGGGAGATGCACATATTTACCTGAATCACGTTGACCCAC 12968543 Query 19198 TAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATG 19257 | ||| ||||| | ||| || | ||||| || || ||||| ||||||| | Sbjct 12968542 TGAAAATGCAGTTTCAGCGAGAACCGAGGCCTTTCCCAAAGCTCAAAATCCTTCGAAAAG 12968483 Query 19258 TAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAcc 19317 | | || | ||||| || || | ||||||||||| || || |||||||||| Sbjct 12968482 TTGAGAAAATTGATGACTTCAAGGCTGAAGTCTTTCAGCTTGAAGGGTACAATCCACACC 12968423 Query 19318 ccccccTAAAAATGGAAATGGCTCTTTAATGGATTTTTAAA 19358 | | | ||||||||||||||| |||| | ||||||| Sbjct 12968422 CGACTATTAAAATGGAAATGGCTGTTTAGAGTGCTTTTAAA 12968382 >seq5 Length=63188916 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| |||||||| || || || | || ||||| ||||| | |||||||| | ||| Sbjct 52112255 ATGGCTCTACCTCCGTGCCATGCGCTTTGCCAGTTCTACGTGGTGAACGGTGAGCTGTCC 52112196 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | |||||||| ||||| || |||||||| || || || ||||||||||| | Sbjct 52112195 TGCCAGCTGTACCAGAGGTCGGGAGACATGGGCCTGGGTGTGCCCTTCAACATTGCCAGC 52112136 Query 19092 TATGCACTTCTTACCTACAT 19111 || || || || |||||||| Sbjct 52112135 TACGCCCTGCTCACCTACAT 52112116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399488969535915