Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq8 105 5e-18
seq5 104 2e-17
>seq8
Length=46046909
Score = 105 bits (116), Expect = 5e-18
Identities = 192/281 (68%), Gaps = 0/281 (0%)
Strand=Plus/Minus
Query 19078 TCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAA 19137
|||||||||| | || || || || |||||||| | || || | || || || ||
Sbjct 12968662 TCAACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACACATCACCGGCCTGAAGC 12968603
Query 19138 CCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTT 19197
| || || || | ||||| |||| ||||||||||||||| ||||||| | || |
Sbjct 12968602 CAGGTGACTTTGTACATACTTTGGGAGATGCACATATTTACCTGAATCACGTTGACCCAC 12968543
Query 19198 TAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATG 19257
| ||| ||||| | ||| || | ||||| || || ||||| ||||||| |
Sbjct 12968542 TGAAAATGCAGTTTCAGCGAGAACCGAGGCCTTTCCCAAAGCTCAAAATCCTTCGAAAAG 12968483
Query 19258 TAACAGATATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAcc 19317
| | || | ||||| || || | ||||||||||| || || ||||||||||
Sbjct 12968482 TTGAGAAAATTGATGACTTCAAGGCTGAAGTCTTTCAGCTTGAAGGGTACAATCCACACC 12968423
Query 19318 ccccccTAAAAATGGAAATGGCTCTTTAATGGATTTTTAAA 19358
| | | ||||||||||||||| |||| | |||||||
Sbjct 12968422 CGACTATTAAAATGGAAATGGCTGTTTAGAGTGCTTTTAAA 12968382
>seq5
Length=63188916
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031
|||| |||||||| || || || | || ||||| ||||| | |||||||| | |||
Sbjct 52112255 ATGGCTCTACCTCCGTGCCATGCGCTTTGCCAGTTCTACGTGGTGAACGGTGAGCTGTCC 52112196
Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091
||||| | |||||||| ||||| || |||||||| || || || ||||||||||| |
Sbjct 52112195 TGCCAGCTGTACCAGAGGTCGGGAGACATGGGCCTGGGTGTGCCCTTCAACATTGCCAGC 52112136
Query 19092 TATGCACTTCTTACCTACAT 19111
|| || || || ||||||||
Sbjct 52112135 TACGCCCTGCTCACCTACAT 52112116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399488969535915
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |