Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq17 432 3e-116 seq13 163 2e-35 seq4 129 4e-25 seq8 96.9 3e-15 >seq17 Length=33267342 Score = 432 bits (478), Expect = 3e-116 Identities = 428/548 (78%), Gaps = 12/548 (2%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATA---CTTCAAATTTGTACTTAATACTT 4011 |||| || || |||||| |||||| ||| ||| ||||||||||||||||||| | | Sbjct 16275974 AAAACACCTTCACATTAATCATTCTTGTCAAATATTACTTCAAATTTGTACTTAATGCCT 16275915 Query 4012 TTCTCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCT 4071 ||||| || || |||| ||||||||||| ||| |||||| | |||||| | |||||| Sbjct 16275914 TTCTCCTCCTGGACATCAGAAAGAACACCTGGGTATTCTGGGACAAGTTTATTTTTCTCC 16275855 Query 4072 AGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAAC 4131 | ||||| |||||||||||| ||||||| || ||| || || ||||| || |||||||| Sbjct 16275854 AAATCAATTTCTGGAAAAAATGTGTCACTTTTAAATTCCTGTATGATGCTTGTCACAAAT 16275795 Query 4132 AGT-TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTAT 4190 ||| ||||||| || ||| | |||| ||||| || || |||||||| ||||| | ||| Sbjct 16275794 AGTCTTAAGATGGCCTGGCTTGTTCATGGCTTCCTTGTAAACAGAACTGCCTCCCACTAT 16275735 Query 4191 CCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATC 4250 ||| || |||||||||||||||| ||||||||| || | || ||| ||| | |||||| Sbjct 16275734 CCAAACTATGTCTACTTTATTTGTTAATTCTGGTTGCTTAGTTAGTGTTAGGGTATCATC 16275675 Query 4251 TAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAAC 4310 ||||| || | |||||||||| | |||||| | ||||| ||||| |||||||||| Sbjct 16275674 CAAACTT---GCAAGAAAATGAGCTTTTTGTGGAGGTTCCTTAAGTTCTCTGCTGAGAAC 16275618 Query 4311 AACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTT 4370 |||||||||| | |||||||| | |||||||||||||| |||||| | ||||| | Sbjct 16275617 TTTATTAATTCTGTCCTTTAAAGGTTGATTCTTCTCAGGAATGGAGAACTAGGTCTTCCT 16275558 Query 4371 ACCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAA 4430 |||||||||||| | |||||||||| || ||| ||||| || || ||||| |||||||| Sbjct 16275557 ACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTCATCCTTTGGAA 16275498 Query 4431 ATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGT--TTGCCAATGCCC 4488 || || || |||||| ||| ||||| |||| || || ||| || || |||||| Sbjct 16275497 ATACTT-AATTCATTCTGGAGTGGGGGCCAGGGCAGGT--CCCTGTTCTTTCCGATGCCC 16275441 Query 4489 ATGTTTTG 4496 ||||| || Sbjct 16275440 ATGTTCTG 16275433 >seq13 Length=35552856 Score = 163 bits (180), Expect = 2e-35 Identities = 171/222 (77%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTC-ACTAGCATCTTCTCTAGCCTAAATGA 27010 |||||||| || ||||| |||||||| || ||| || ||||||||||| |||| || || Sbjct 14806082 ACAATGGGGGTGACGCAGGTGCAGCCCAC-GTCTACCAGCATCTTCTCCAGCCGGAAGGA 14806140 Query 27011 ATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGA 27070 | |||||| ||| | | |||||| || | |||||||| ||||| ||||| || Sbjct 14806141 GTGGGGGCAGTTCTGAGACTCCCTGCGCAGGACCAAGATCTCTTGCTGGATGGGGACGGA 14806200 Query 27071 GTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGC 27130 |||||||||| |||||| ||||| ||||| || ||||| || | || ||| ||||| || Sbjct 14806201 GTTCATGTGGACGTCTACCTTCCCTTCAGCGTTGACACAGCCCAGGTGGCGGCACTTCGC 14806260 Query 27131 TTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||||| ||||||||||| ||||| || | || ||||| || Sbjct 14806261 CTCCCAGATCACAGAGGGGTATCTCTCAGGGTCCTCATTACG 14806302 >seq4 Length=66015319 Score = 129 bits (142), Expect = 4e-25 Identities = 94/109 (86%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| |||| ||||| | |||||||||| | |||||||| || ||||||||||| Sbjct 56962628 CTTGAGTTCTCTGCTAAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 56962569 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| |||||| ||||||||||||| |||||||||||| || Sbjct 56962568 AATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 56962520 Score = 120 bits (132), Expect = 2e-22 Identities = 102/126 (81%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | ||||| |||||||| |||||||||| ||||||||| Sbjct 56970316 TTATAAACAGAACTGCCTCCCACGATCCAAACCATGTCCACTTTATTTGTTAATTCTGGT 56970257 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 ||||| ||||| ||| ||||| || ||||| || || | ||||||||||| |||||| Sbjct 56970256 TGTTCAATAAGTGATAAGGCATCCTCCAAACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 56970197 Query 4285 AGCTCC 4290 | ||| Sbjct 56970196 GGTTCC 56970191 Score = 114 bits (126), Expect = 9e-21 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||||| | ||||| |||||||||||| ||||||| |||||| || ||||| Sbjct 56972806 AAGTTTATATTTCTTGAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCAT 56972747 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| |||||||||||| |||||| || ||| | |||| ||||| || Sbjct 56972746 GATCCTTGTCACAAACAGTCTAAGATGGCCTGGTTTGTTCATGGCTTCCTT 56972696 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| |||||| |||||||||||||||||||||||||| | ||| || || || | || Sbjct 56980746 ATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGATAT 56980687 Query 4028 TAGAAAGAACACTTGGATAT 4047 ||||||||||| ||| ||| Sbjct 56980686 CAGAAAGAACACCTGGGTAT 56980667 >seq8 Length=46046909 Score = 96.9 bits (106), Expect = 3e-15 Identities = 188/278 (68%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTCA 101593 ||||||||||| | ||||||||| | |||||||| || || ||| | || | | Sbjct 12968395 TAAACAGCCATTTCCATTTTAATAGTCGGGTGTGGATTGTACCCTTCAAGCTGAAAGACT 12968454 Query 101594 TCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGGT 101653 || || || ||||||||||| ||| |||| | | | | || |||| || || Sbjct 12968455 TCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGGC 12968514 Query 101654 CTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCA 101713 || || |||| ||||||||||| || | |||| ||||| | || || || ||| Sbjct 12968515 CTCGGTTCTCGCTGAAACTGCATTTTCAGTGGGTCAACGTGATTCAGGTAAATATGTGCA 12968574 Query 101714 TCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAA 101773 ||||| | |||||| | ||| || || ||| || |||| || || |||||| | Sbjct 12968575 TCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCGGTGATGTGTGCGATCATGTAG 12968634 Query 101774 GTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 || | || | ||||| |||||||| | ||||| || Sbjct 12968635 GTGAGCAGGGCGTAGCTGGCAATGTTGAGGGGCACACC 12968672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361237608713837