Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq17 432 3e-116
seq13 163 2e-35
seq4 129 4e-25
seq8 96.9 3e-15
>seq17
Length=33267342
Score = 432 bits (478), Expect = 3e-116
Identities = 428/548 (78%), Gaps = 12/548 (2%)
Strand=Plus/Minus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATA---CTTCAAATTTGTACTTAATACTT 4011
|||| || || |||||| |||||| ||| ||| ||||||||||||||||||| | |
Sbjct 16275974 AAAACACCTTCACATTAATCATTCTTGTCAAATATTACTTCAAATTTGTACTTAATGCCT 16275915
Query 4012 TTCTCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCT 4071
||||| || || |||| ||||||||||| ||| |||||| | |||||| | ||||||
Sbjct 16275914 TTCTCCTCCTGGACATCAGAAAGAACACCTGGGTATTCTGGGACAAGTTTATTTTTCTCC 16275855
Query 4072 AGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAAC 4131
| ||||| |||||||||||| ||||||| || ||| || || ||||| || ||||||||
Sbjct 16275854 AAATCAATTTCTGGAAAAAATGTGTCACTTTTAAATTCCTGTATGATGCTTGTCACAAAT 16275795
Query 4132 AGT-TTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTAT 4190
||| ||||||| || ||| | |||| ||||| || || |||||||| ||||| | |||
Sbjct 16275794 AGTCTTAAGATGGCCTGGCTTGTTCATGGCTTCCTTGTAAACAGAACTGCCTCCCACTAT 16275735
Query 4191 CCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATC 4250
||| || |||||||||||||||| ||||||||| || | || ||| ||| | ||||||
Sbjct 16275734 CCAAACTATGTCTACTTTATTTGTTAATTCTGGTTGCTTAGTTAGTGTTAGGGTATCATC 16275675
Query 4251 TAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAAC 4310
||||| || | |||||||||| | |||||| | ||||| ||||| ||||||||||
Sbjct 16275674 CAAACTT---GCAAGAAAATGAGCTTTTTGTGGAGGTTCCTTAAGTTCTCTGCTGAGAAC 16275618
Query 4311 AACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTT 4370
|||||||||| | |||||||| | |||||||||||||| |||||| | ||||| |
Sbjct 16275617 TTTATTAATTCTGTCCTTTAAAGGTTGATTCTTCTCAGGAATGGAGAACTAGGTCTTCCT 16275558
Query 4371 ACCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGAA 4430
|||||||||||| | |||||||||| || ||| ||||| || || ||||| ||||||||
Sbjct 16275557 ACCCATAATCACCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTCATCCTTTGGAA 16275498
Query 4431 ATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGT--TTGCCAATGCCC 4488
|| || || |||||| ||| ||||| |||| || || ||| || || ||||||
Sbjct 16275497 ATACTT-AATTCATTCTGGAGTGGGGGCCAGGGCAGGT--CCCTGTTCTTTCCGATGCCC 16275441
Query 4489 ATGTTTTG 4496
||||| ||
Sbjct 16275440 ATGTTCTG 16275433
>seq13
Length=35552856
Score = 163 bits (180), Expect = 2e-35
Identities = 171/222 (77%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 26952 ACAATGGGAGTAACGCATGTGCAGCCTACAGTC-ACTAGCATCTTCTCTAGCCTAAATGA 27010
|||||||| || ||||| |||||||| || ||| || ||||||||||| |||| || ||
Sbjct 14806082 ACAATGGGGGTGACGCAGGTGCAGCCCAC-GTCTACCAGCATCTTCTCCAGCCGGAAGGA 14806140
Query 27011 ATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGA 27070
| |||||| ||| | | |||||| || | |||||||| ||||| ||||| ||
Sbjct 14806141 GTGGGGGCAGTTCTGAGACTCCCTGCGCAGGACCAAGATCTCTTGCTGGATGGGGACGGA 14806200
Query 27071 GTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGC 27130
|||||||||| |||||| ||||| ||||| || ||||| || | || ||| ||||| ||
Sbjct 14806201 GTTCATGTGGACGTCTACCTTCCCTTCAGCGTTGACACAGCCCAGGTGGCGGCACTTCGC 14806260
Query 27131 TTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172
||||| ||||||||||| ||||| || | || ||||| ||
Sbjct 14806261 CTCCCAGATCACAGAGGGGTATCTCTCAGGGTCCTCATTACG 14806302
>seq4
Length=66015319
Score = 129 bits (142), Expect = 4e-25
Identities = 94/109 (86%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| |||| ||||| | |||||||||| | |||||||| || |||||||||||
Sbjct 56962628 CTTGAGTTCTCTGCTAAGAACTAAATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 56962569
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| |||||| ||||||||||||| |||||||||||| ||
Sbjct 56962568 AATGGAGAACCAGGTCTTTCTACCCATAATCACCAAATTCTGTTTACCT 56962520
Score = 120 bits (132), Expect = 2e-22
Identities = 102/126 (81%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
||||| |||||||| ||||| | ||||| |||||||| |||||||||| |||||||||
Sbjct 56970316 TTATAAACAGAACTGCCTCCCACGATCCAAACCATGTCCACTTTATTTGTTAATTCTGGT 56970257
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284
||||| ||||| ||| ||||| || ||||| || || | ||||||||||| ||||||
Sbjct 56970256 TGTTCAATAAGTGATAAGGCATCCTCCAAACTTTTGGCAAGAAAATGAGCTCCTTGTGGA 56970197
Query 4285 AGCTCC 4290
| |||
Sbjct 56970196 GGTTCC 56970191
Score = 114 bits (126), Expect = 9e-21
Identities = 92/111 (83%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
|||||| ||||||| | ||||| |||||||||||| ||||||| |||||| || |||||
Sbjct 56972806 AAGTTTATATTTCTTGAAATCAATTTCTGGAAAAAATGTGTCACTTTCAAATTCCTGCAT 56972747
Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166
|||||| |||||||||||| |||||| || ||| | |||| ||||| ||
Sbjct 56972746 GATCCTTGTCACAAACAGTCTAAGATGGCCTGGTTTGTTCATGGCTTCCTT 56972696
Score = 91.5 bits (100), Expect = 1e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| |||||| |||||||||||||||||||||||||| | ||| || || || | ||
Sbjct 56980746 ATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTTTCCTCCTGGATAT 56980687
Query 4028 TAGAAAGAACACTTGGATAT 4047
||||||||||| ||| |||
Sbjct 56980686 CAGAAAGAACACCTGGGTAT 56980667
>seq8
Length=46046909
Score = 96.9 bits (106), Expect = 3e-15
Identities = 188/278 (68%), Gaps = 0/278 (0%)
Strand=Plus/Plus
Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAATGTCA 101593
||||||||||| | ||||||||| | |||||||| || || ||| | || | |
Sbjct 12968395 TAAACAGCCATTTCCATTTTAATAGTCGGGTGTGGATTGTACCCTTCAAGCTGAAAGACT 12968454
Query 101594 TCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGGT 101653
|| || || ||||||||||| ||| |||| | | | | || |||| || ||
Sbjct 12968455 TCAGCCTTGAAGTCATCAATTTTCTCAACTTTTCGAAGGATTTTGAGCTTTGGGAAAGGC 12968514
Query 101654 CTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGCA 101713
|| || |||| ||||||||||| || | |||| ||||| | || || || |||
Sbjct 12968515 CTCGGTTCTCGCTGAAACTGCATTTTCAGTGGGTCAACGTGATTCAGGTAAATATGTGCA 12968574
Query 101714 TCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAA 101773
||||| | |||||| | ||| || || ||| || |||| || || |||||| |
Sbjct 12968575 TCTCCCAAAGTATGTACAAAGTCACCTGGCTTCAGGCCGGTGATGTGTGCGATCATGTAG 12968634
Query 101774 GTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811
|| | || | ||||| |||||||| | ||||| ||
Sbjct 12968635 GTGAGCAGGGCGTAGCTGGCAATGTTGAGGGGCACACC 12968672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361237608713837
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |