Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq48 143 3e-29 seq60 123 3e-23 seq35 102 1e-16 >seq48 Length=18573065 Score = 143 bits (158), Expect = 3e-29 Identities = 114/137 (83%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||||||||| || |||||||| ||||| | Sbjct 2886231 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATG 2886290 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 |||||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 2886291 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2886350 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 2886351 CTGTTTCTTACACCATA 2886367 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | ||| || || || || || || || || | Sbjct 2907862 CACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGACACAGCAATCCTTGCTGCCAGGA 2907921 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 |||||||||| || || | ||||| | || || ||| |||| || | || ||| || | Sbjct 2907922 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 2907981 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 2907982 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2908027 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 2895432 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 2895491 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 2895492 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCCAAATGCCA 2895551 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 2895552 AGGCTCCAGGTAAAT 2895566 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||| || || ||||| || | || || | | ||||| || || || || || || | Sbjct 2890558 CATAGGTTTCATATGGACCATACTCCTTGGACAAGTCACAGCTGGCTTCCAAGGCTCCAT 2890617 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||||||||||||| ||||| | |||||| || || || || | || ||||| |||| Sbjct 2890618 AATAAATGGTTTCAAAGATTTGCTTATTCAGCAACTGGGCCTCTGGACTCTCAAAAGGAT 2890677 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 2890678 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 2890737 Query 53568 TCTTATTAGA 53577 ||||| || Sbjct 2890738 GTTTATTTGA 2890747 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/151 (72%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 53588 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTG 53647 ||||| ||||| ||||| |||||||| ||||||||||| | ||||| |||||| |||||| Sbjct 2890962 TCTGGGATAGGGTAATAGTTAATATCAATAATTTTATTCAAGTTTCGGACAATAACTTTG 2891021 Query 53648 ACCACATCCTTCAGTTTGAGAAAATCAAAT---TGTCCATCTATTACAAACATGTTCAAT 53704 || || || || ||| ||| || ||| | | | |||||||| |||| Sbjct 2891022 GTGACTTCAGCCAACTTCTCAAAGTCATATGTGTGTTCTGATGTGACAAACATATTCAGG 2891081 Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCT 53735 || | || |||| |||||||| || |||| Sbjct 2891082 GCCAGGGAAGCCAAGTTACAAACTGCAACCT 2891112 >seq60 Length=14545593 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | || |||||||||||||| |||||||| || || || || | Sbjct 8429094 CCTCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCT 8429035 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 8429034 TGAGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 8428975 Query 24277 CAATAAGTCTTTCTCC 24292 | | || || ||||| Sbjct 8428974 CTACAACTCGCTCTCC 8428959 Score = 100 bits (110), Expect = 3e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || ||||| | |||||||||||||| || || |||||||| ||||| Sbjct 8427081 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGC 8427022 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || || |||||||| | ||||| |||| ||| |||||| | ||| ||||| Sbjct 8427021 AATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTAAAACGTTC 8426962 >seq35 Length=24201928 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| || ||||| |||||||| ||||| || || | || || Sbjct 13540743 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 13540802 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 13540803 AGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 13540861 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 24519 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 24578 |||||||||||||| ||||| ||||||||||||||||| || || || || |||||| Sbjct 13547396 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGATAAAA 13547455 Query 24579 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 24627 || || || |||| ||| || || ||||| | | || ||| || |||| Sbjct 13547456 TACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 13547504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593698689767760