Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq3 363 2e-95 seq5 179 4e-40 seq15 170 2e-37 >seq3 Length=68426573 Score = 363 bits (402), Expect = 2e-95 Identities = 658/944 (70%), Gaps = 25/944 (3%) Strand=Plus/Plus Query 9427 CCATGTTACAAAAGTGACA-CTACGAGACTAGCAGCTCAGGTGGTACCCGCCCTGTATCT 9485 |||||| | |||| ||| | | ||| || ||||| ||| | | ||| | |||||| Sbjct 44832535 CCATGTGAAAAAATCAACATCAAGGAG-CTGGCAGCCCAGTTCCTGCCCCCACTGTATGC 44832593 Query 9486 GCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATA 9545 || |||||| | |||| || |||||||| | | |||||| | || ||| | ||| Sbjct 44832594 TCTGGTGTTTGTGATTGGTCTGCTGGGCAATCTGGTGGTGGTGGTGATCCTCACGAAATA 44832653 Query 9546 CATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCT 9605 || || | || | | || ||||| | ||| | || |||||||| ||||||||||| Sbjct 44832654 CAAGAGGCTCCGGATTATGACCAACATCTACCTGCTCAATTTGGCAATTTCTGACTTGCT 44832713 Query 9606 ATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTT 9665 ||||| || ||| ||||||| ||||| |||||| | | || | |||| ||| ||| Sbjct 44832714 CTTTCTATTCACTCTGCCATTCTGGATTCACTATGTCAGG-TGGA--ATGAGTGGGTTTT 44832770 Query 9666 TGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGT 9725 ||| | | ||||||| | ||| | | | ||||| | ||||||| || | Sbjct 44832771 TGGCCACTGCATGTGTAAGTTCCTCGTATGGCTTTATTACACGGGCTTGTACAGTGAGAT 44832830 Query 9726 CTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC 9785 ||||| |||||||||||| || ||||| ||||||| || | ||| | ||||| ||| Sbjct 44832831 CTTTTTCATCATCCTGCTGACGATAGACCGGTATCTGGCCATCGTCCACGCTGTGTTTGC 44832890 Query 9786 --TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTG 9843 || ||| | || || || | |||| | | ||| |||| |||||| | ||| Sbjct 44832891 CCTTCGAGCCC--GGACTGTCACTTTTGGCCTCATAACCAGTGTCCTGACCTGGGTCCTG 44832948 Query 9844 GCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGG 9903 || ||| | |||||||||| ||| |||| ||||| || ||| || ||| | Sbjct 44832949 GCGGGGCTAGCAGCCCTCCCTGAGTTTATCTTCCATGGGGCCCTAGAGGATTTTGG-ACA 44833007 Query 9904 GTTCAG-TGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACG 9961 || || || ||||| |||||||| | | | || || |||| || || | Sbjct 44833008 GTACATCTGCCTTCCTTCTTACCCAGAAAA-TGAAGAAGATACCTGGAAACGTTTTCATG 44833066 Query 9962 TTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACT 10021 || | ||| ||| || ||||| | |||||||||| | |||||||||||||||| Sbjct 44833067 TTCTGAGAATGAATATCTTGGGTCTCGCTCTGCCTCTGCTTGTAATGGCTGTCTGCTACT 44833126 Query 10022 ATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGC 10081 | ||| || | || | || |||| ||||||| || || |||||||||||||| ||| Sbjct 44833127 CAGGAATCATTAAAACATTGCTGAGATGCCCCAGTAAAAAAAAGTACAAGGCCATACGGC 44833186 Query 10082 TCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCC 10141 |||| |||||||||||||||| || ||| |||| ||| |||| |||||| | ||| ||| Sbjct 44833187 TCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGGCACCTTACAACCTGGTTATCC 44833246 Query 10142 TACTGTCTACCTTTCACGCAAC--CCTTCTT---AACCTGCAGTGTGCATTGAGCAGTAA 10196 | | || || ||||| ||| |||||| ||| || |||| | ||||| | Sbjct 44833247 TTATCTCCACTTTTCA---AACGGTCTTCTTTGAGACCAGC--TGTGAACGGAGCAAACA 44833301 Query 10197 CTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCC 10256 |||||||||| |||||| | ||| | | ||||| || ||||| ||| ||||||| Sbjct 44833302 GCTGGACATGGCCCTGCTGGTGACAGAGGTGATGGCCTATACGCACTGCTGCGTCAACCC 44833361 Query 10257 AGTGATCTACGCGTTCGTGGGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACA 10315 ||||||||||| || || || |||| ||| ||||| ||||| |||||| ||||||| Sbjct 44833362 GGTGATCTACGCCTTTGTTGGCGAGAGGTTCCAGAAG-CACCTCCGCCACTTTTTCCACA 44833420 Query 10316 CCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCT 10359 |||||||||||||||| |||| |||||||| ||||| ||| Sbjct 44833421 TGCACGTGGCCATCTACCTGGGCAAATACATCCCATTCCTTTCT 44833464 Score = 363 bits (402), Expect = 2e-95 Identities = 658/944 (70%), Gaps = 25/944 (3%) Strand=Plus/Plus Query 176313 CCATGTTACAAAAGTGACA-CTACGAGACTAGCAGCTCAGGTGGTACCCGCCCTGTATCT 176371 |||||| | |||| ||| | | ||| || ||||| ||| | | ||| | |||||| Sbjct 44832535 CCATGTGAAAAAATCAACATCAAGGAG-CTGGCAGCCCAGTTCCTGCCCCCACTGTATGC 44832593 Query 176372 GCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATA 176431 || |||||| | |||| || |||||||| | | |||||| | || ||| | ||| Sbjct 44832594 TCTGGTGTTTGTGATTGGTCTGCTGGGCAATCTGGTGGTGGTGGTGATCCTCACGAAATA 44832653 Query 176432 CATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCT 176491 || || | || | | || ||||| | ||| | || |||||||| ||||||||||| Sbjct 44832654 CAAGAGGCTCCGGATTATGACCAACATCTACCTGCTCAATTTGGCAATTTCTGACTTGCT 44832713 Query 176492 ATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTT 176551 ||||| || ||| ||||||| ||||| |||||| | | || | |||| ||| ||| Sbjct 44832714 CTTTCTATTCACTCTGCCATTCTGGATTCACTATGTCAGG-TGGA--ATGAGTGGGTTTT 44832770 Query 176552 TGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGT 176611 ||| | | ||||||| | ||| | | | ||||| | ||||||| || | Sbjct 44832771 TGGCCACTGCATGTGTAAGTTCCTCGTATGGCTTTATTACACGGGCTTGTACAGTGAGAT 44832830 Query 176612 CTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC 176671 ||||| |||||||||||| || ||||| ||||||| || | ||| | ||||| ||| Sbjct 44832831 CTTTTTCATCATCCTGCTGACGATAGACCGGTATCTGGCCATCGTCCACGCTGTGTTTGC 44832890 Query 176672 --TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTG 176729 || ||| | || || || | |||| | | ||| |||| |||||| | ||| Sbjct 44832891 CCTTCGAGCCC--GGACTGTCACTTTTGGCCTCATAACCAGTGTCCTGACCTGGGTCCTG 44832948 Query 176730 GCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGG 176789 || ||| | |||||||||| ||| |||| ||||| || ||| || ||| | Sbjct 44832949 GCGGGGCTAGCAGCCCTCCCTGAGTTTATCTTCCATGGGGCCCTAGAGGATTTTGG-ACA 44833007 Query 176790 GTTCAG-TGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACG 176847 || || || ||||| |||||||| | | | || || |||| || || | Sbjct 44833008 GTACATCTGCCTTCCTTCTTACCCAGAAAA-TGAAGAAGATACCTGGAAACGTTTTCATG 44833066 Query 176848 TTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACT 176907 || | ||| ||| || ||||| | |||||||||| | |||||||||||||||| Sbjct 44833067 TTCTGAGAATGAATATCTTGGGTCTCGCTCTGCCTCTGCTTGTAATGGCTGTCTGCTACT 44833126 Query 176908 ATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGC 176967 | ||| || | || | || |||| ||||||| || || |||||||||||||| ||| Sbjct 44833127 CAGGAATCATTAAAACATTGCTGAGATGCCCCAGTAAAAAAAAGTACAAGGCCATACGGC 44833186 Query 176968 TCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCC 177027 |||| |||||||||||||||| || ||| |||| ||| |||| |||||| | ||| ||| Sbjct 44833187 TCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGGCACCTTACAACCTGGTTATCC 44833246 Query 177028 TACTGTCTACCTTTCACGCAAC--CCTTCTT---AACCTGCAGTGTGCATTGAGCAGTAA 177082 | | || || ||||| ||| |||||| ||| || |||| | ||||| | Sbjct 44833247 TTATCTCCACTTTTCA---AACGGTCTTCTTTGAGACCAGC--TGTGAACGGAGCAAACA 44833301 Query 177083 CTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCC 177142 |||||||||| |||||| | ||| | | ||||| || ||||| ||| ||||||| Sbjct 44833302 GCTGGACATGGCCCTGCTGGTGACAGAGGTGATGGCCTATACGCACTGCTGCGTCAACCC 44833361 Query 177143 AGTGATCTACGCGTTCGTGGGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACA 177201 ||||||||||| || || || |||| ||| ||||| ||||| |||||| ||||||| Sbjct 44833362 GGTGATCTACGCCTTTGTTGGCGAGAGGTTCCAGAAG-CACCTCCGCCACTTTTTCCACA 44833420 Query 177202 CCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCT 177245 |||||||||||||||| |||| |||||||| ||||| ||| Sbjct 44833421 TGCACGTGGCCATCTACCTGGGCAAATACATCCCATTCCTTTCT 44833464 Score = 93.3 bits (102), Expect = 5e-14 Identities = 214/321 (67%), Gaps = 5/321 (2%) Strand=Plus/Minus Query 176346 GCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATC 176405 || ||| || | ||| || |||| || || ||| || |||| || | ||||| ||| Sbjct 44790525 GCCCAGCTGCTGCCCCCCTTGTACTCCCTGGTATTTGTCATTGGCCTGGTCGGCAACATC 44790466 Query 176406 TTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTG 176465 | ||||| | | |||| ||||| || | ||| || | | || | ||| | || Sbjct 44790465 CTGGTGGTCCTGGTCCTCATGCAATACAAGAGGCTCAGAAGCATGACCAGCATCTACCTC 44790406 Query 176466 TTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTAT 176525 | ||| |||| | |||||| |||| || || || || |||| || ||||| |||| Sbjct 44790405 CTCAACCTGGCCGTTTCTGACCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACTAC 44790346 Query 176526 -ATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGT 176584 | ||| | || | |||| ||| ||| | | |||||||| ||||| || | Sbjct 44790345 CAGCTGAAGG----ATAACTGGATTTTCGGTGATGGCATGTGTAAATTGCTCTCAGGGCT 44790290 Query 176585 GTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTA 176644 | |||||| |||||||| || |||| | |||||||||||| || | || ||||| Sbjct 44790289 TTATTACATAGGCTTGTACAGCGAGATCTTCTTCATCATCCTGCTGACCATCGATAGGTA 44790230 Query 176645 TCTAGCTGTTGTCTATGCTGT 176665 | || ||||| ||||||| Sbjct 44790229 CTTGGCCATTGTCCATGCTGT 44790209 Score = 93.3 bits (102), Expect = 5e-14 Identities = 214/321 (67%), Gaps = 5/321 (2%) Strand=Plus/Minus Query 9460 GCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATC 9519 || ||| || | ||| || |||| || || ||| || |||| || | ||||| ||| Sbjct 44790525 GCCCAGCTGCTGCCCCCCTTGTACTCCCTGGTATTTGTCATTGGCCTGGTCGGCAACATC 44790466 Query 9520 TTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTG 9579 | ||||| | | |||| ||||| || | ||| || | | || | ||| | || Sbjct 44790465 CTGGTGGTCCTGGTCCTCATGCAATACAAGAGGCTCAGAAGCATGACCAGCATCTACCTC 44790406 Query 9580 TTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTAT 9639 | ||| |||| | |||||| |||| || || || || |||| || ||||| |||| Sbjct 44790405 CTCAACCTGGCCGTTTCTGACCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACTAC 44790346 Query 9640 -ATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGT 9698 | ||| | || | |||| ||| ||| | | |||||||| ||||| || | Sbjct 44790345 CAGCTGAAGG----ATAACTGGATTTTCGGTGATGGCATGTGTAAATTGCTCTCAGGGCT 44790290 Query 9699 GTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTA 9758 | |||||| |||||||| || |||| | |||||||||||| || | || ||||| Sbjct 44790289 TTATTACATAGGCTTGTACAGCGAGATCTTCTTCATCATCCTGCTGACCATCGATAGGTA 44790230 Query 9759 TCTAGCTGTTGTCTATGCTGT 9779 | || ||||| ||||||| Sbjct 44790229 CTTGGCCATTGTCCATGCTGT 44790209 >seq5 Length=63188916 Score = 179 bits (198), Expect = 4e-40 Identities = 137/162 (85%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| |||| ||||||||| ||||||| ||||||||| |||||||||||| Sbjct 52112095 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 52112154 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||| ||||| | |||||||||||||||||| ||||| ||| | || Sbjct 52112155 ACACCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 52112214 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 |||||||||||||| || ||||| || || || |||||| Sbjct 52112215 ACGTAGAACTGGCAAAGCGCATGGCACGGAGGTAGAGCCATG 52112256 >seq15 Length=34426505 Score = 170 bits (188), Expect = 2e-37 Identities = 130/153 (85%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 138086 GCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCCTTTT 138145 ||| |||||||| ||| ||||| || |||||||||||||| |||||||| | ||||| Sbjct 31359185 GCCGCAGCCTCAGCCTCAGGGTCTTCAGCTTTTCCCCCAGAGAGTTCACGTGCTCCTTGA 31359126 Query 138146 CCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGGATCA 138205 ||| | || ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 31359125 T---GTCTGGGCCGTGGTTCTCAGCCTGGGGCATCACCTCCTCCAGGTAAAACTGGATCA 31359069 Query 138206 TCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||| |||| ||| ||||| ||||||||||||| Sbjct 31359068 TCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 31359036 Score = 118 bits (130), Expect = 1e-21 Identities = 83/95 (87%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 ||||||||||||||| | ||||| ||||| ||||||||||| ||||||||||||||||| Sbjct 31361469 TCAGTTTTTCATCTTCATCGTCATATAGGCTTCTATGTAGTTGATGAAGATGTCAAACTC 31361410 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||| |||||||| ||||| | ||||||| Sbjct 31361409 ACTCATGGCTTTGTAGACACCTTTCCCTTGGAGCT 31361375 Score = 107 bits (118), Expect = 2e-18 Identities = 127/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356 |||||| ||||| |||||||||||||| || | |||||| |||||||||||||||||| | Sbjct 31357901 AAAGAAAGTCTTCACCCTGCTGAAGGCAGCTCGGAGCTCTTGGAGCATGTGGGGCAGGTT 31357842 Query 138357 GGTGGGCAATGTAGGGCAGTCGTCCCCAGACT---CACTGTCATATTTGTTGTCGGCCCA 138413 || || || | |||| | || ||||| || || | || | | ||| | Sbjct 31357841 GGCTGGGAAGAGGGTGCAGCTGCCCTTAGACTGGGTACCCTCGTCTTGGCT---GGCTCC 31357785 Query 138414 CACCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATGGC 138464 |||||||||||||| | |||||||||||| |||| || ||| |||||| Sbjct 31357784 CACCCCGGCCAGGAAGATCAGGCAACACAGTAGCGCTGAGCTGGGCATGGC 31357734 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 138236 CCTTAAAGTCTTCCAGCAGGGACCCGTCCAGCAACATGTTGTCCAGCTGGTCCTTCATCT 138295 |||||||||| ||||||| |||||||| || ||||||||||||||||| ||||||||| | Sbjct 31358782 CCTTAAAGTCCTCCAGCAAGGACCCGTTCAACAACATGTTGTCCAGCTCGTCCTTCATTT 31358723 Query 138296 G 138296 | Sbjct 31358722 G 31358722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590054030411480