Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq3 363 2e-95
seq5 179 4e-40
seq15 170 2e-37
>seq3
Length=68426573
Score = 363 bits (402), Expect = 2e-95
Identities = 658/944 (70%), Gaps = 25/944 (3%)
Strand=Plus/Plus
Query 9427 CCATGTTACAAAAGTGACA-CTACGAGACTAGCAGCTCAGGTGGTACCCGCCCTGTATCT 9485
|||||| | |||| ||| | | ||| || ||||| ||| | | ||| | ||||||
Sbjct 44832535 CCATGTGAAAAAATCAACATCAAGGAG-CTGGCAGCCCAGTTCCTGCCCCCACTGTATGC 44832593
Query 9486 GCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATA 9545
|| |||||| | |||| || |||||||| | | |||||| | || ||| | |||
Sbjct 44832594 TCTGGTGTTTGTGATTGGTCTGCTGGGCAATCTGGTGGTGGTGGTGATCCTCACGAAATA 44832653
Query 9546 CATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCT 9605
|| || | || | | || ||||| | ||| | || |||||||| |||||||||||
Sbjct 44832654 CAAGAGGCTCCGGATTATGACCAACATCTACCTGCTCAATTTGGCAATTTCTGACTTGCT 44832713
Query 9606 ATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTT 9665
||||| || ||| ||||||| ||||| |||||| | | || | |||| ||| |||
Sbjct 44832714 CTTTCTATTCACTCTGCCATTCTGGATTCACTATGTCAGG-TGGA--ATGAGTGGGTTTT 44832770
Query 9666 TGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGT 9725
||| | | ||||||| | ||| | | | ||||| | ||||||| || |
Sbjct 44832771 TGGCCACTGCATGTGTAAGTTCCTCGTATGGCTTTATTACACGGGCTTGTACAGTGAGAT 44832830
Query 9726 CTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC 9785
||||| |||||||||||| || ||||| ||||||| || | ||| | ||||| |||
Sbjct 44832831 CTTTTTCATCATCCTGCTGACGATAGACCGGTATCTGGCCATCGTCCACGCTGTGTTTGC 44832890
Query 9786 --TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTG 9843
|| ||| | || || || | |||| | | ||| |||| |||||| | |||
Sbjct 44832891 CCTTCGAGCCC--GGACTGTCACTTTTGGCCTCATAACCAGTGTCCTGACCTGGGTCCTG 44832948
Query 9844 GCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGG 9903
|| ||| | |||||||||| ||| |||| ||||| || ||| || ||| |
Sbjct 44832949 GCGGGGCTAGCAGCCCTCCCTGAGTTTATCTTCCATGGGGCCCTAGAGGATTTTGG-ACA 44833007
Query 9904 GTTCAG-TGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACG 9961
|| || || ||||| |||||||| | | | || || |||| || || |
Sbjct 44833008 GTACATCTGCCTTCCTTCTTACCCAGAAAA-TGAAGAAGATACCTGGAAACGTTTTCATG 44833066
Query 9962 TTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACT 10021
|| | ||| ||| || ||||| | |||||||||| | ||||||||||||||||
Sbjct 44833067 TTCTGAGAATGAATATCTTGGGTCTCGCTCTGCCTCTGCTTGTAATGGCTGTCTGCTACT 44833126
Query 10022 ATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGC 10081
| ||| || | || | || |||| ||||||| || || |||||||||||||| |||
Sbjct 44833127 CAGGAATCATTAAAACATTGCTGAGATGCCCCAGTAAAAAAAAGTACAAGGCCATACGGC 44833186
Query 10082 TCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCC 10141
|||| |||||||||||||||| || ||| |||| ||| |||| |||||| | ||| |||
Sbjct 44833187 TCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGGCACCTTACAACCTGGTTATCC 44833246
Query 10142 TACTGTCTACCTTTCACGCAAC--CCTTCTT---AACCTGCAGTGTGCATTGAGCAGTAA 10196
| | || || ||||| ||| |||||| ||| || |||| | ||||| |
Sbjct 44833247 TTATCTCCACTTTTCA---AACGGTCTTCTTTGAGACCAGC--TGTGAACGGAGCAAACA 44833301
Query 10197 CTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCC 10256
|||||||||| |||||| | ||| | | ||||| || ||||| ||| |||||||
Sbjct 44833302 GCTGGACATGGCCCTGCTGGTGACAGAGGTGATGGCCTATACGCACTGCTGCGTCAACCC 44833361
Query 10257 AGTGATCTACGCGTTCGTGGGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACA 10315
||||||||||| || || || |||| ||| ||||| ||||| |||||| |||||||
Sbjct 44833362 GGTGATCTACGCCTTTGTTGGCGAGAGGTTCCAGAAG-CACCTCCGCCACTTTTTCCACA 44833420
Query 10316 CCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCT 10359
|||||||||||||||| |||| |||||||| ||||| |||
Sbjct 44833421 TGCACGTGGCCATCTACCTGGGCAAATACATCCCATTCCTTTCT 44833464
Score = 363 bits (402), Expect = 2e-95
Identities = 658/944 (70%), Gaps = 25/944 (3%)
Strand=Plus/Plus
Query 176313 CCATGTTACAAAAGTGACA-CTACGAGACTAGCAGCTCAGGTGGTACCCGCCCTGTATCT 176371
|||||| | |||| ||| | | ||| || ||||| ||| | | ||| | ||||||
Sbjct 44832535 CCATGTGAAAAAATCAACATCAAGGAG-CTGGCAGCCCAGTTCCTGCCCCCACTGTATGC 44832593
Query 176372 GCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATA 176431
|| |||||| | |||| || |||||||| | | |||||| | || ||| | |||
Sbjct 44832594 TCTGGTGTTTGTGATTGGTCTGCTGGGCAATCTGGTGGTGGTGGTGATCCTCACGAAATA 44832653
Query 176432 CATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCT 176491
|| || | || | | || ||||| | ||| | || |||||||| |||||||||||
Sbjct 44832654 CAAGAGGCTCCGGATTATGACCAACATCTACCTGCTCAATTTGGCAATTTCTGACTTGCT 44832713
Query 176492 ATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTT 176551
||||| || ||| ||||||| ||||| |||||| | | || | |||| ||| |||
Sbjct 44832714 CTTTCTATTCACTCTGCCATTCTGGATTCACTATGTCAGG-TGGA--ATGAGTGGGTTTT 44832770
Query 176552 TGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGT 176611
||| | | ||||||| | ||| | | | ||||| | ||||||| || |
Sbjct 44832771 TGGCCACTGCATGTGTAAGTTCCTCGTATGGCTTTATTACACGGGCTTGTACAGTGAGAT 44832830
Query 176612 CTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC 176671
||||| |||||||||||| || ||||| ||||||| || | ||| | ||||| |||
Sbjct 44832831 CTTTTTCATCATCCTGCTGACGATAGACCGGTATCTGGCCATCGTCCACGCTGTGTTTGC 44832890
Query 176672 --TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTG 176729
|| ||| | || || || | |||| | | ||| |||| |||||| | |||
Sbjct 44832891 CCTTCGAGCCC--GGACTGTCACTTTTGGCCTCATAACCAGTGTCCTGACCTGGGTCCTG 44832948
Query 176730 GCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGG 176789
|| ||| | |||||||||| ||| |||| ||||| || ||| || ||| |
Sbjct 44832949 GCGGGGCTAGCAGCCCTCCCTGAGTTTATCTTCCATGGGGCCCTAGAGGATTTTGG-ACA 44833007
Query 176790 GTTCAG-TGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACG 176847
|| || || ||||| |||||||| | | | || || |||| || || |
Sbjct 44833008 GTACATCTGCCTTCCTTCTTACCCAGAAAA-TGAAGAAGATACCTGGAAACGTTTTCATG 44833066
Query 176848 TTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACT 176907
|| | ||| ||| || ||||| | |||||||||| | ||||||||||||||||
Sbjct 44833067 TTCTGAGAATGAATATCTTGGGTCTCGCTCTGCCTCTGCTTGTAATGGCTGTCTGCTACT 44833126
Query 176908 ATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGC 176967
| ||| || | || | || |||| ||||||| || || |||||||||||||| |||
Sbjct 44833127 CAGGAATCATTAAAACATTGCTGAGATGCCCCAGTAAAAAAAAGTACAAGGCCATACGGC 44833186
Query 176968 TCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCC 177027
|||| |||||||||||||||| || ||| |||| ||| |||| |||||| | ||| |||
Sbjct 44833187 TCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGGCACCTTACAACCTGGTTATCC 44833246
Query 177028 TACTGTCTACCTTTCACGCAAC--CCTTCTT---AACCTGCAGTGTGCATTGAGCAGTAA 177082
| | || || ||||| ||| |||||| ||| || |||| | ||||| |
Sbjct 44833247 TTATCTCCACTTTTCA---AACGGTCTTCTTTGAGACCAGC--TGTGAACGGAGCAAACA 44833301
Query 177083 CTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCC 177142
|||||||||| |||||| | ||| | | ||||| || ||||| ||| |||||||
Sbjct 44833302 GCTGGACATGGCCCTGCTGGTGACAGAGGTGATGGCCTATACGCACTGCTGCGTCAACCC 44833361
Query 177143 AGTGATCTACGCGTTCGTGGGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACA 177201
||||||||||| || || || |||| ||| ||||| ||||| |||||| |||||||
Sbjct 44833362 GGTGATCTACGCCTTTGTTGGCGAGAGGTTCCAGAAG-CACCTCCGCCACTTTTTCCACA 44833420
Query 177202 CCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCT 177245
|||||||||||||||| |||| |||||||| ||||| |||
Sbjct 44833421 TGCACGTGGCCATCTACCTGGGCAAATACATCCCATTCCTTTCT 44833464
Score = 93.3 bits (102), Expect = 5e-14
Identities = 214/321 (67%), Gaps = 5/321 (2%)
Strand=Plus/Minus
Query 176346 GCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATC 176405
|| ||| || | ||| || |||| || || ||| || |||| || | ||||| |||
Sbjct 44790525 GCCCAGCTGCTGCCCCCCTTGTACTCCCTGGTATTTGTCATTGGCCTGGTCGGCAACATC 44790466
Query 176406 TTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTG 176465
| ||||| | | |||| ||||| || | ||| || | | || | ||| | ||
Sbjct 44790465 CTGGTGGTCCTGGTCCTCATGCAATACAAGAGGCTCAGAAGCATGACCAGCATCTACCTC 44790406
Query 176466 TTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTAT 176525
| ||| |||| | |||||| |||| || || || || |||| || ||||| ||||
Sbjct 44790405 CTCAACCTGGCCGTTTCTGACCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACTAC 44790346
Query 176526 -ATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGT 176584
| ||| | || | |||| ||| ||| | | |||||||| ||||| || |
Sbjct 44790345 CAGCTGAAGG----ATAACTGGATTTTCGGTGATGGCATGTGTAAATTGCTCTCAGGGCT 44790290
Query 176585 GTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTA 176644
| |||||| |||||||| || |||| | |||||||||||| || | || |||||
Sbjct 44790289 TTATTACATAGGCTTGTACAGCGAGATCTTCTTCATCATCCTGCTGACCATCGATAGGTA 44790230
Query 176645 TCTAGCTGTTGTCTATGCTGT 176665
| || ||||| |||||||
Sbjct 44790229 CTTGGCCATTGTCCATGCTGT 44790209
Score = 93.3 bits (102), Expect = 5e-14
Identities = 214/321 (67%), Gaps = 5/321 (2%)
Strand=Plus/Minus
Query 9460 GCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATC 9519
|| ||| || | ||| || |||| || || ||| || |||| || | ||||| |||
Sbjct 44790525 GCCCAGCTGCTGCCCCCCTTGTACTCCCTGGTATTTGTCATTGGCCTGGTCGGCAACATC 44790466
Query 9520 TTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTG 9579
| ||||| | | |||| ||||| || | ||| || | | || | ||| | ||
Sbjct 44790465 CTGGTGGTCCTGGTCCTCATGCAATACAAGAGGCTCAGAAGCATGACCAGCATCTACCTC 44790406
Query 9580 TTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTAT 9639
| ||| |||| | |||||| |||| || || || || |||| || ||||| ||||
Sbjct 44790405 CTCAACCTGGCCGTTTCTGACCTGCTCTTCCTCTTCACGCTGCCCTTCTGGATTGACTAC 44790346
Query 9640 -ATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGT 9698
| ||| | || | |||| ||| ||| | | |||||||| ||||| || |
Sbjct 44790345 CAGCTGAAGG----ATAACTGGATTTTCGGTGATGGCATGTGTAAATTGCTCTCAGGGCT 44790290
Query 9699 GTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTA 9758
| |||||| |||||||| || |||| | |||||||||||| || | || |||||
Sbjct 44790289 TTATTACATAGGCTTGTACAGCGAGATCTTCTTCATCATCCTGCTGACCATCGATAGGTA 44790230
Query 9759 TCTAGCTGTTGTCTATGCTGT 9779
| || ||||| |||||||
Sbjct 44790229 CTTGGCCATTGTCCATGCTGT 44790209
>seq5
Length=63188916
Score = 179 bits (198), Expect = 4e-40
Identities = 137/162 (85%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
|||||||||| ||| |||| ||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 52112095 AGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 52112154
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|| ||||| |||||||| ||||| | |||||||||||||||||| ||||| ||| | ||
Sbjct 52112155 ACACCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 52112214
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911
|||||||||||||| || ||||| || || || ||||||
Sbjct 52112215 ACGTAGAACTGGCAAAGCGCATGGCACGGAGGTAGAGCCATG 52112256
>seq15
Length=34426505
Score = 170 bits (188), Expect = 2e-37
Identities = 130/153 (85%), Gaps = 3/153 (2%)
Strand=Plus/Minus
Query 138086 GCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCCTTTT 138145
||| |||||||| ||| ||||| || |||||||||||||| |||||||| | |||||
Sbjct 31359185 GCCGCAGCCTCAGCCTCAGGGTCTTCAGCTTTTCCCCCAGAGAGTTCACGTGCTCCTTGA 31359126
Query 138146 CCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGGATCA 138205
||| | || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 31359125 T---GTCTGGGCCGTGGTTCTCAGCCTGGGGCATCACCTCCTCCAGGTAAAACTGGATCA 31359069
Query 138206 TCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
|||| |||| ||| ||||| |||||||||||||
Sbjct 31359068 TCTCCGACAAGGCTTGGCAACCCAGGTAACCCT 31359036
Score = 118 bits (130), Expect = 1e-21
Identities = 83/95 (87%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981
||||||||||||||| | ||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 31361469 TCAGTTTTTCATCTTCATCGTCATATAGGCTTCTATGTAGTTGATGAAGATGTCAAACTC 31361410
Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016
|||||||| |||||||| ||||| | |||||||
Sbjct 31361409 ACTCATGGCTTTGTAGACACCTTTCCCTTGGAGCT 31361375
Score = 107 bits (118), Expect = 2e-18
Identities = 127/171 (74%), Gaps = 6/171 (4%)
Strand=Plus/Minus
Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356
|||||| ||||| |||||||||||||| || | |||||| |||||||||||||||||| |
Sbjct 31357901 AAAGAAAGTCTTCACCCTGCTGAAGGCAGCTCGGAGCTCTTGGAGCATGTGGGGCAGGTT 31357842
Query 138357 GGTGGGCAATGTAGGGCAGTCGTCCCCAGACT---CACTGTCATATTTGTTGTCGGCCCA 138413
|| || || | |||| | || ||||| || || | || | | ||| |
Sbjct 31357841 GGCTGGGAAGAGGGTGCAGCTGCCCTTAGACTGGGTACCCTCGTCTTGGCT---GGCTCC 31357785
Query 138414 CACCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATGGC 138464
|||||||||||||| | |||||||||||| |||| || ||| ||||||
Sbjct 31357784 CACCCCGGCCAGGAAGATCAGGCAACACAGTAGCGCTGAGCTGGGCATGGC 31357734
Score = 84.2 bits (92), Expect = 3e-11
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 138236 CCTTAAAGTCTTCCAGCAGGGACCCGTCCAGCAACATGTTGTCCAGCTGGTCCTTCATCT 138295
|||||||||| ||||||| |||||||| || ||||||||||||||||| ||||||||| |
Sbjct 31358782 CCTTAAAGTCCTCCAGCAAGGACCCGTTCAACAACATGTTGTCCAGCTCGTCCTTCATTT 31358723
Query 138296 G 138296
|
Sbjct 31358722 G 31358722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590054030411480
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