Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1 324 2e-83 seq35 313 3e-80 seq3 307 1e-78 seq2 215 6e-51 seq9 196 6e-45 seq7 132 6e-26 seq63 84.2 3e-11 >seq1 Length=79733107 Score = 324 bits (358), Expect = 2e-83 Identities = 401/542 (74%), Gaps = 10/542 (2%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 || ||||| |||||||||||||| | | | | |||| | ||||| || |||| ||||| Sbjct 47201488 AGGAGGGCTTCGATGTCGGGCTCGATGTCGATGGTCGGAAAGCGGCAGCCGTACGTGCGC 47201547 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| ||||| | |||||| |||||||| |||||||||||| | ||||||| || Sbjct 47201548 ACAGGCACACCGTCCGGGCCCACCGGGAACTTCTTGAAGTTCCAGGCGAGGTCGTTGTGG 47201607 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||||| |||| || || || | || | ||| | ||| || || Sbjct 47201608 CACACTGGAGACCAGGTGATGAACTTGGAGTTGGTCTTGGGCGCAGTGGCGTCCTCTCT- 47201666 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| ||||| | |||||||| |||||| | || ||| || || || ||| Sbjct 47201667 GGCGTGGGCAGAGCCTCCGGCAGGAAGGCTAAGAGCTG-TGCGCCTGCGCGCCCTTCACC 47201725 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||| |||||| |||||| | ||||| | |||||| ||| | || ||| || |||| Sbjct 47201726 TCGCGCTTCTCCAAGAGCGTGAAGTTGGCCTCGAACCCGCCGTCGGGTCGGTCGCGCTTG 47201785 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 |||||| || |||||| | |||| |||||| ||||| || | ||||||||| ||| || Sbjct 47201786 AGGGAATTCAGGATCTCTTCGTTCTTGGCGTTCTCCTGATGCCAGAACTGGTTGCACAGG 47201845 Query 83417 AACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTG 83476 || || || || ||||| || || | || |||||||||||||||| || ||||| ||| Sbjct 47201846 AAGCCGAG-ACGACCAGGCCGCGGGGCCCACGGCGCCGCTGCAGCTCATTGATCTGGGTG 47201904 Query 83477 TACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGCCC 83536 || ||| ||||||| | |||||||| | ||| |||||||| |||||| || | || Sbjct 47201905 TAGTCCTGGACCGTTGTGCCTCAGAGCGCCGCCGCGTTCTCGGTGAGCAGCGCCTTGTCC 47201964 Query 83537 CGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGTAC 83596 || | |||| | ||| |||| || |||| | | |||| || |||||||| ||| Sbjct 47201965 CGCGGGGAGCCCAGGCT-----GTTCCCCGCCGGCCAGC-GGCGCGCAGAGAAGGC-TAC 47202017 Query 83597 AC 83598 || Sbjct 47202018 AC 47202019 >seq35 Length=24201928 Score = 313 bits (346), Expect = 3e-80 Identities = 318/412 (77%), Gaps = 3/412 (1%) Strand=Plus/Plus Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118 |||||| |||||||||||||| ||| | | |||| | ||||| |||||||| ||||||| Sbjct 18317245 CAGGGCTTCGATGTCGGGCTCGACGTCAATGGTCGGAAAGCGGCGGCTGTACTTGCGCAC 18317304 Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 ||| |||| | | ||||||| ||||| ||| ||||||||||| |||||||||||| | Sbjct 18317305 AGGCACGCCGCCCGGGCCCACCAGGAACTCCTCAAAGTTCCAGGCGACGTCGTTGCGGGA 18317364 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 |||||||||||||| |||| || |||| || || ||||| | ||| | ||| | Sbjct 18317365 CACTGGAGACCAGGAGATGAACTTGGGGCCGGTCGTGAGCGCAGTGGCATCGGCTCTAAG 18317424 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 ||| ||||| ||||| || |||||||||||||||| | || | ||| ||||| ||||| Sbjct 18317425 CGCAGGCAGAGCCTCCCGCAGGAAGGCGAAGAGCG--AGCGCGCCTGCGCCGTTCACCTC 18317482 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 ||||||||| |||||| | ||||| ||||||| | || || || ||| | || || Sbjct 18317483 GCACTTCTC-AAGAGCTTGAAGTTGAGCTCGAACCGGTGTCCGGGTTGGAGGGATTTGAG 18317541 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAA 83418 ||| || ||| || | |||| |||||| |||||||| ||||||||||| |||||||| Sbjct 18317542 TGAATTCAGGATGTCTTCGTTCTTGGCGTTCTCCTGGTGCCCGAACTGGTTGCACGGGAA 18317601 Query 83419 CCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATC 83470 || |||| |||| || || | || ||| ||||||||||||||||| || Sbjct 18317602 GCCGAGCAGGCCCAGGCCGCGGGGCCCAAGGTGCCGCTGCAGCTCGTTCGTC 18317653 >seq3 Length=68426573 Score = 307 bits (340), Expect = 1e-78 Identities = 271/338 (80%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| || ||||||||||| | | | | ||| | ||||| |||||||||||||| Sbjct 47610136 AGCAGGGCTTCAATGTCGGGCTCGATGTCAATTGTCGGAAAGCGGCGGCTGTACCTGCGC 47610195 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| ||||| | ||||||| ||||||||||||||||||||| |||||||||||| Sbjct 47610196 ACAGGCACACCGTCCGGGCCCACCAGGAACTTCTCGAAGTTCCAGGCGACGTCGTTGCGG 47610255 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||||||||||| |||| || ||||||| ||| ||||| || ||||||| || Sbjct 47610256 CACACTGGAGACCAGGTGATGAACTTGGGGTCGGTCATGAGCGCAGTCGTGTCGTCACTG 47610315 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| ||||| ||||| || ||||||||||||||||| || || ||| || || ||| Sbjct 47610316 GGCGCTGGCAGAGCCTCCCGCAGGAAGGCGAAGAGCGGGTGCGCTTGTGCCCCATTCACC 47610375 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||| | ||||| |||||||| ||| || || | ||||| ||| Sbjct 47610376 TCGCACTTCTCGAAGAGCGTGAAGTTGGGCTCGAACCCGCCGCCGGGTCTGACGTACTTG 47610435 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 || ||| || |||||| | |||| ||| || ||||| Sbjct 47610436 AGCGAATTCAGGATCTCTTCGTTCTTGGCATTCTCCTG 47610473 Score = 192 bits (212), Expect = 7e-44 Identities = 169/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||||||||| || ||||| || ||||| ||||| || || | || |||| Sbjct 47610743 CCTGATGCCCGAACTGGTTGCATGGGAAGCCGAGCACGACCAGGCCGCGGGGCCCAAGGC 47610802 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 ||| |||||||||||||||||| ||||| ||||||||||| | |||||||| ||||| | Sbjct 47610803 GCCCCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTTGTGCCTCAGAGCGACGCCA 47610862 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | |||||||||||||| ||| |||||| | | |||| | |||||| | || || |||| Sbjct 47610863 CATTCTCGATGAGCAACACCTTGCCCCGCAGGGAGCCCAGGCTCACGAGCTCCCCGCCGG 47610922 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || |||||||| ||||| || Sbjct 47610923 CCAGCGGGCGAGCAGAGAAGGCATACACCGA 47610953 >seq2 Length=78580661 Score = 215 bits (238), Expect = 6e-51 Identities = 273/373 (73%), Gaps = 3/373 (1%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| | ||||||| |||| | | | |||| ||||| |||||||||||||| Sbjct 54992802 AGCAGGGCTTTGATGTCGTGCTCGATGTTGAAGGTCAAA-AGCGGCGGCTGTACCTGCGC 54992744 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 | ||| | ||| | ||||| | ||||||||| ||||||| || |||||||||||| Sbjct 54992743 GCAGGCACACGGTCCGGGCCCACTAGGAACTTCTCCAAGTTCCGGGTGACGTCGTTGCGG 54992684 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 |||||||| ||||||| |||| | || || | ||| ||| | | | | | Sbjct 54992683 CACACTGGTGACCAGGTGATGAACCTGGAGTGGGTCATGAGAGCAGCGGCGCCAGCACGG 54992624 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||| ||| | ||| | || ||||||||||||||| | || ||| || || || || Sbjct 54992623 GGCGCTGGCGGAGCCCCCCGCAGGAAGGCGAAGAGCCGGTGCGCCAGCGCGCCATTCGCC 54992564 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 | | ||||||| |||||||| ||||| |||||||| ||| || || ||||||| ||| Sbjct 54992563 TTGAACTTCTCTAAGAGCATGAAGTTGGGCTCGAACCCGCCTCCGGGTCGGACGTCCTTG 54992504 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGG 83416 | ||| | |||||| | |||| | ||| ||||| || ||||||||||| |||||| Sbjct 54992503 GGAGAATTTAGGATCTCTCCGTTCTTG--GTTCTCCTGATGCCCGAACTGGTTGCACGGG 54992446 Query 83417 AACCCAAGCACTA 83429 || || ||||||| Sbjct 54992445 AAGCCGAGCACTA 54992433 >seq9 Length=45735564 Score = 196 bits (216), Expect = 6e-45 Identities = 253/342 (74%), Gaps = 12/342 (4%) Strand=Plus/Minus Query 83136 CCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAA 83195 |||||| || ||||| ||||||| |||| | || ||| |||||||||||||||||| | Sbjct 22293594 CCACCAGGAGCTTCTGGAAGTTCTAGGCGA--TCCTTGTGGCACACTGGAGACCAGGTGA 22293537 Query 83196 TGAGCTGGGGGTCGCTCACGAGCGTGCTCA-TGTC--GTCGCTAGGCGCCGGCAGGGCCT 83252 ||||| ||| | | |||||||| ||| || | ||| | || ||| |||||||| Sbjct 22293536 CGAGCTTGGGATTGGTCACGAGC----TCAGTGGCTAGTCACCGGGTGCCATCAGGGCCT 22293481 Query 83253 CTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGA 83312 | ||||||||||||||| | |||||| ||||| || ||| | ||||||| ||||| Sbjct 22293480 TCTGCAGGAAGGCGAAGAGCAGGTGTGCCTGAGCACCATTCACCACACACTTCTTGAAGA 22293421 Query 83313 GCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCT 83372 |||| ||||| |||| ||| || ||| ||| || ||| |||||| || | ||| Sbjct 22293420 GCATGAAGTTGGGCTTGAACCCACAGCCAAATGGGATGTACTTGAGGGAATTCAGGCTCT 22293361 Query 83373 CGGCATTCTGGGCGTTTTCCTGGTGACC-GAACTGGTTACACGGGAACCCAAGCACTACC 83431 | |||| ||| |||||||| || || ||||||||| ||||||| || ||||| || Sbjct 22293360 CTTTGTTCTTGGCATTTTCCTGATGTCCAGAACTGGTTGAACGGGAAGCCTAGCACGGCC 22293301 Query 83432 A-GCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTG 83472 | || || | ||| |||| | |||||||||| ||| |||| Sbjct 22293300 AGGCTCCAGGGCT-GGAGGCACTGCTGCAGCTCCTTCTTCTG 22293260 >seq7 Length=57674156 Score = 132 bits (146), Expect = 6e-26 Identities = 206/287 (72%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| ||| ||| Sbjct 29882078 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCGCGCCTGC 29882020 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || ||| | ||||||| Sbjct 29882019 TGGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 29881960 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || ||||| ||| | | | |||| ||||| Sbjct 29881959 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCCTCCCGCATCAGGCTCATCCGCCACTAC 29881901 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| | ||| |||| ||||| ||||| |||| | |||| ||| Sbjct 29881900 GTGCAGCTGCTCTATCCGCGGGCGAAGAACGACCGCGTCTGGACCCTGGAGTTTGTGGGC 29881841 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||||||||||| | |||||| || |||||| Sbjct 29881840 AAGCTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 29881796 >seq63 Length=14444393 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/210 (70%), Gaps = 8/210 (4%) Strand=Plus/Plus Query 83105 CTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCC 83164 |||||||| |||| ||| | |||| || |||| ||||||||| |||||| |||| Sbjct 4738304 CTGTACCTAGGCACAGGCATAGGATCAGGGCCTACCAGGAACTTCTCAAAGTTCTAGGCA 4738363 Query 83165 ACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCT- 83223 | ||| |||| |||||| ||| ||||| ||||||| |||||| ||| ||| | | Sbjct 4738364 ATGTCATTGCAGCACACCAGAGGCCAGGTGATGAGCTTGGGGTCAGTCAAGAGTGCAGTG 4738423 Query 83224 -CATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCC 83282 ||| | || | ||| ||| | |||| || | | | || |||| | | |||| | Sbjct 4738424 GCATTT--TCAGTGGGCATGGGCGGAACCTCCCGCATGGAAGCAAAGAACAG--GTGCAC 4738479 Query 83283 TTG--CACCGTTGACCTCGCACTTCTCGAA 83310 | | |||| | ||||| ||||||||||| Sbjct 4738480 TAGGGCACCACTCACCTCACACTTCTCGAA 4738509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608773308053480