Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq44 93.3 4e-14
seq25 93.3 4e-14
>seq44
Length=19882732
Score = 93.3 bits (102), Expect = 4e-14
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 20955 CGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTT 21014
||||| | |||||| | |||| |||||||| || || || || |||| | || ||
Sbjct 2427258 CGCAGGCGAAGCACCGTGTGCAGGGTGGACTCTTTCTGGATATTGCAGTCTGAGAGAGTG 2427317
Query 21015 TGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCT 21074
| ||||||||||||||||||||||| || | || | ||||||||| || | |||
Sbjct 2427318 CCGCCGTCCTCCAGCTGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGTGGGATGCCC 2427377
Query 21075 TCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACG 21134
|||| ||| ||| || ||| || | | | | | ||||||||||| | | |
Sbjct 2427378 TCCTCGTCTTGGATTTTAGCTTTGACATTCTCAATAATGTCACCGGGCTCGACCTTGAGG 2427437
Query 21135 GTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| ||||||||||| | | || || ||||| || || ||
Sbjct 2427438 GTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGTAT 2427478
>seq25
Length=29395486
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/231 (69%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009
|||||| || | ||| | || |||| || ||||| || | ||| ||||| | |
Sbjct 9574052 CCCCTC--AGACAGAGGATCAGGTGCAGGGTTGACTC----TGGAGGTTGTAGTCAGAAA 9574105
Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069
| || || | || || ||||| ||||| ||| | || || ||||||||||| || |
Sbjct 9574106 GAGTGAGGCCATCTTCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGA 9574165
Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129
|||||| || || |||||| | ||| | | | ||||||| ||| ||| |
Sbjct 9574166 TGCCTTCTTTATCCTGGATCTTGGCCTCCACATTCTCCATGGTATCACTGGGTTCCACCT 9574225
Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
||| ||| |||||||||||||| | || || || || |||||||||||||
Sbjct 9574226 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTGA 9574276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422243313421292
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |