Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq44 93.3 4e-14 seq25 93.3 4e-14 >seq44 Length=19882732 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 20955 CGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTT 21014 ||||| | |||||| | |||| |||||||| || || || || |||| | || || Sbjct 2427258 CGCAGGCGAAGCACCGTGTGCAGGGTGGACTCTTTCTGGATATTGCAGTCTGAGAGAGTG 2427317 Query 21015 TGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCT 21074 | ||||||||||||||||||||||| || | || | ||||||||| || | ||| Sbjct 2427318 CCGCCGTCCTCCAGCTGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGTGGGATGCCC 2427377 Query 21075 TCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACG 21134 |||| ||| ||| || ||| || | | | | | ||||||||||| | | | Sbjct 2427378 TCCTCGTCTTGGATTTTAGCTTTGACATTCTCAATAATGTCACCGGGCTCGACCTTGAGG 2427437 Query 21135 GTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||||||||| | | || || ||||| || || || Sbjct 2427438 GTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGTAT 2427478 >seq25 Length=29395486 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| | || |||| || ||||| || | ||| ||||| | | Sbjct 9574052 CCCCTC--AGACAGAGGATCAGGTGCAGGGTTGACTC----TGGAGGTTGTAGTCAGAAA 9574105 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | || || ||||| ||||| ||| | || || ||||||||||| || | Sbjct 9574106 GAGTGAGGCCATCTTCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGA 9574165 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 |||||| || || |||||| | ||| | | | ||||||| ||| ||| | Sbjct 9574166 TGCCTTCTTTATCCTGGATCTTGGCCTCCACATTCTCCATGGTATCACTGGGTTCCACCT 9574225 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||| ||| |||||||||||||| | || || || || ||||||||||||| Sbjct 9574226 CCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTGA 9574276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422243313421292