Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq30 102 8e-17 seq44 100 3e-16 seq25 100 3e-16 seq60 93.3 4e-14 >seq30 Length=26277727 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| | | |||| ||| || ||||||||||| Sbjct 20335935 GACAAGGAGGGCATCCCCCCTGACCAGCAGAGGTTGATCTTCGCTGGGAAACAGCTGGAA 20335876 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| || |||||||||||||| || | || ||||| | || || Sbjct 20335875 GATGGACGCACCCTGTCTGATTACAACATCCAGAAAGAATCTACTCTGCACTTGGTCCTG 20335816 Query 40903 CGCTTGAGGGGCGG 40916 ||||||||||| || Sbjct 20335815 CGCTTGAGGGGGGG 20335802 >seq44 Length=19882732 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 || || || || || || || || | |||||| ||||||||| || | ||||| || Sbjct 2427478 ATACAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACCCTCAAGGTCGAGCCCGGT 2427419 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | ||||| | ||| | ||||||||||| | |||||| Sbjct 2427418 GACATTATTGAGAATGTCAAAGCTAAAATCCAAGACGAGGAGGGCATCCCACCTGACCAG 2427359 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || | | ||||||||||||||||| |||| |||| ||| |||| ||| Sbjct 2427358 CAGTGTCTGACTTTTGCGGGCAAACAGCTGGAGGACGGCGGCACTCTCTCAGACTGCAAT 2427299 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| ||| |||| ||||| Sbjct 2427298 ATCCAGAAAGAGTCCACCCTGCA 2427276 >seq25 Length=29395486 Score = 100 bits (110), Expect = 3e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 9574274 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAACCC 9574215 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | || | | | ||| || || | || ||||| |||||||| | ||| Sbjct 9574214 AGTGATACCATGGAGAATGTGGAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGAC 9574155 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | ||||||| || ||||| ||||| || || | | ||| || |||||| Sbjct 9574154 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTAGAAGATGGCCTCACTCTTTCTGACTAC 9574095 Query 40867 AACATCCAGA 40876 ||| |||||| Sbjct 9574094 AACCTCCAGA 9574085 >seq60 Length=14545593 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| | || ||||| || || || || || |||||||||| ||| ||| || Sbjct 8428959 GGAGAGCGAGTTGTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 8429018 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 | ||||| |||||||||||||| || || ||||||||||| || || ||| ||||| Sbjct 8429019 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCCGGCCTCACGTTTTCCAATGAGCTG 8429078 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| || |||| Sbjct 8429079 ATCAGCAGAGATGAGG 8429094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515199318979120