Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq15 84.2 3e-11 >seq15 Length=34426505 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||||| ||||| || | ||||| || || || | ||| | || | | Sbjct 5141719 ATGCAAATCTTTATGAAGACCCTGATGGGCAAGACCATCTCTCTTGAGGTCGAGCTCAGT 5141778 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || | | || | ||| ||||| |||||||| | || || | |||||| ||| Sbjct 5141779 GACACCACTGAGAACATCAAAACCAAAATCCAAGATAAGAACGGCATCCTACCTGAGCAA 5141838 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || |||||| |||| ||||| | ||||||||||| | | ||| || ||| Sbjct 5141839 CAGTGTCTGATTTTTACAGGCAAACAGCTGGAGGATAGTCGCAGTCTCACAGACTACAAT 5141898 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || || ||||| | ||| || | ||||| Sbjct 5141899 ATCCAGAAAGACACCACTGTGTACTTGGT 5141927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755426848841600