Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq7 104 4e-17 >seq7 Length=57674156 Score = 104 bits (114), Expect = 4e-17 Identities = 108/138 (78%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 52052 GTCAGGCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATT 52111 |||| |||||||||||||| ||| | ||||| || |||||||| |||||||| | || | Sbjct 6004528 GTCAAGCATTTTTTGGAGCCCAGTTGAATTCCTTCATCCATGTGGTTATGTACTCCTACT 6004469 Query 52112 ATGGTATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCT 52169 |||| | | || | ||| || ||| ||||| |||||||| ||||||||||| || || Sbjct 6004468 ATGGGTTAACTGCGTTTGG-CCCATGGATTCAG-AAGTATCTTTGGTGGAAACGATACCT 6004411 Query 52170 TACTATAATGCAGTTGGT 52187 ||||| ||||| |||| Sbjct 6004410 GACTATGTTGCAGCTGGT 6004393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923161176143480