Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq15 102 9e-17
seq111 100 3e-16
seq44 98.7 1e-15
seq30 98.7 1e-15
seq1 98.7 1e-15
seq162 96.9 4e-15
seq25 91.5 2e-13
>seq15
Length=34426505
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|| ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 116781 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 116722
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 116721 ACTATACTAACGAGGA 116706
>seq111
Length=4240621
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 3786586 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 3786527
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 3786526 ATACTAACGAGGA 3786514
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 3917585 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3917644
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 3917645 TACTAACGAGGA 3917656
>seq44
Length=19882732
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 10264376 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 10264317
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 10264316 TACTAACGAGGA 10264305
>seq30
Length=26277727
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 20346622 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 20346681
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 20346682 TACTAACGAGGA 20346693
Score = 95.1 bits (104), Expect = 1e-14
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135
||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 20352759 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAG 20352818
Query 60136 GA 60137
||
Sbjct 20352819 GA 20352820
>seq1
Length=79733107
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 21446156 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 21446097
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 21446096 TACTAACGAGGA 21446085
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 23541350 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 23541291
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 23541290 TACTAACGAGGA 23541279
>seq162
Length=873626
Score = 96.9 bits (106), Expect = 4e-15
Identities = 59/63 (94%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135
||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 46114 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACGAG 46055
Query 60136 GAT 60138
|||
Sbjct 46054 GAT 46052
>seq25
Length=29395486
Score = 91.5 bits (100), Expect = 2e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 43005 TTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGC 43064
||||| |||| ||||| | | || ||||||||||| || || || ||||| | ||||
Sbjct 9574093 TTGTAGTCAGAAAGAGTGAGGCCATCTTCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGC 9574152
Query 43065 TGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG 43124
||||| | || | || || || ||| ||| || | | || ||| || ||
Sbjct 9574153 TGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTCCACATTCTCCATGGTATCA 9574212
Query 43125 CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184
|| | |||||| || | |||||||| ||||| || || ||||| || ||||||||||||
Sbjct 9574213 CTGGGTTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATT 9574272
Query 43185 TTTAC 43189
|| ||
Sbjct 9574273 TTGAC 9574277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571795534988360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |