Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq14 86.0 9e-12
seq115 84.2 3e-11
>seq14
Length=35217250
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109
||||| | |||||| || || | ||| | ||| || || ||| || || || || || ||
Sbjct 7097602 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 7097660
Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169
| ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||
Sbjct 7097661 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGG 7097720
Query 146170 AATTCCTTCTTTAT 146183
||||||||| ||||
Sbjct 7097721 AATTCCTTCCTTAT 7097734
>seq115
Length=4025681
Score = 84.2 bits (92), Expect = 3e-11
Identities = 101/137 (74%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|||||| |||||| || || | ||| | ||| |||| || | | | || || ||
Sbjct 2519628 CCACCTGGAAGTCTCAACACAAGATGAAGAGTGTATTCCTT---TTGAATGTAGTCAGAC 2519684
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
| ||| | | | | || | |||||| |||||||| |||| |||||||||||| ||||||
Sbjct 2519685 AAAGTACATCCAGCTTCCAGTTGTTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 2519744
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| ||||| ||
Sbjct 2519745 ATTCCTTCCTTATCCTG 2519761
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743497709175040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |