Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq14 86.0 9e-12 seq115 84.2 3e-11 >seq14 Length=35217250 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | ||| || || ||| || || || || || || Sbjct 7097602 CCACCACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 7097660 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| |||| Sbjct 7097661 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGG 7097720 Query 146170 AATTCCTTCTTTAT 146183 ||||||||| |||| Sbjct 7097721 AATTCCTTCCTTAT 7097734 >seq115 Length=4025681 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/137 (74%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||| |||||| || || | ||| | ||| |||| || | | | || || || Sbjct 2519628 CCACCTGGAAGTCTCAACACAAGATGAAGAGTGTATTCCTT---TTGAATGTAGTCAGAC 2519684 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | | | || | |||||| |||||||| |||| |||||||||||| |||||| Sbjct 2519685 AAAGTACATCCAGCTTCCAGTTGTTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 2519744 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 2519745 ATTCCTTCCTTATCCTG 2519761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743497709175040