Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq25 84.2 1e-11 >seq25 Length=29395486 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 34203 TCTGTATGTTGTAGTCGGACAGC-TGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 |||| | ||||||||| || || ||| || | || || | |||||||||||| || ||| Sbjct 9574085 TCTGGAGGTTGTAGTCAGAAAGAGTGA-GGCCATCTTCTAGCTGCTTGCCTGCAAAGATG 9574143 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 |||| ||||||||| || | || || || || ||||| || | || | Sbjct 9574144 AGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTCCACATTCTCC 9574203 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | ||| | | ||| || |||| |||||||| |||||||| || || ||||| ||| Sbjct 9574204 ATGGTATCACTGGGTTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAG 9574263 Query 34382 ATCTGCAT 34389 || ||||| Sbjct 9574264 ATTTGCAT 9574271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323059845122720