Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq60 102 8e-17 seq35 93.3 4e-14 >seq60 Length=14545593 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | ||| || ||||| || || || ||||| ||||||||||| || Sbjct 8429092 TCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8429033 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 8429032 AGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 8428973 Query 16379 ACCAATCGCTCACC 16392 || | |||||| || Sbjct 8428972 ACAACTCGCTCTCC 8428959 >seq35 Length=24201928 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || || | |||| | | | || |||||||| | Sbjct 13524196 TTTAAAAATCTGCATCCAAGGTGAAGACGTGATCTGTGGTTTCTGCCATAACTGCAAAAC 13524255 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 || || || ||||| || ||||||||||||||||| |||||||| ||||| |||| Sbjct 13524256 GCTGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 13524315 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 13524316 CCATAAAATCAAAGGGATTTTCTG 13524339 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/102 (78%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 16049 CCCAATTCCAACAA-TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107 ||||| | | |||| |||||| || || ||||| || |||||||||||||| ||| ||| Sbjct 13528402 CCCAAGTTCCACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACG 13528461 Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 |||||||| || | | ||| || | |||||||||||||| Sbjct 13528462 ATTCATTCCAATGAGGTCAACTGGCAAGGCTTCTGTTAAAAA 13528503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462494152818200