Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq60 102 8e-17
seq35 93.3 4e-14
>seq60
Length=14545593
Score = 102 bits (112), Expect = 8e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | ||| || ||||| || || || ||||| ||||||||||| ||
Sbjct 8429092 TCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8429033
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| ||||| | ||||| || ||||||||||| || ||||| ||||| ||||| ||
Sbjct 8429032 AGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 8428973
Query 16379 ACCAATCGCTCACC 16392
|| | |||||| ||
Sbjct 8428972 ACAACTCGCTCTCC 8428959
>seq35
Length=24201928
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||| | | || || | |||| | | | || |||||||| |
Sbjct 13524196 TTTAAAAATCTGCATCCAAGGTGAAGACGTGATCTGTGGTTTCTGCCATAACTGCAAAAC 13524255
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
|| || || ||||| || ||||||||||||||||| |||||||| ||||| ||||
Sbjct 13524256 GCTGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 13524315
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||| ||||||| ||
Sbjct 13524316 CCATAAAATCAAAGGGATTTTCTG 13524339
Score = 82.4 bits (90), Expect = 7e-11
Identities = 80/102 (78%), Gaps = 1/102 (1%)
Strand=Plus/Plus
Query 16049 CCCAATTCCAACAA-TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACA 16107
||||| | | |||| |||||| || || ||||| || |||||||||||||| ||| |||
Sbjct 13528402 CCCAAGTTCCACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACG 13528461
Query 16108 GTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149
|||||||| || | | ||| || | ||||||||||||||
Sbjct 13528462 ATTCATTCCAATGAGGTCAACTGGCAAGGCTTCTGTTAAAAA 13528503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462494152818200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |