Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq6 1773 0.0
seq82 165 6e-36
>seq6
Length=61284144
Score = 1773 bits (1966), Expect = 0.0
Identities = 1344/1588 (85%), Gaps = 26/1588 (2%)
Strand=Plus/Plus
Query 107085 CCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACA--------- 107135
||||| ||| |||| ||||| || |||||||| ||| |||||| ||
Sbjct 39662678 CCCAGGATGCTCAGCTAGTTTGTAGGGTCAGGTTATAGACCTCCATCAGCAGGCTGGTGT 39662737
Query 107136 ---AGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTA 107192
||| || |||||||| |||||||||||||||||||||| |||||| || ||| |||
Sbjct 39662738 AAGAGGTTCCTAGGCAGGTCTTGACTGAGGATATTTGTCTAGAGAAGAAATATATTTTTG 39662797
Query 107193 CCATCACTCTGGAGTTGAACTTGATGTTCTGG-----AT---------TAGTTTGTAATT 107238
|||||||| |||||||||||||||||||| | || |||||||||| |
Sbjct 39662798 CCATCACTTTGGAGTTGAACTTGATGTTCCTGTGAGCATGTTCAGGGATAGTTTGTAACT 39662857
Query 107239 AAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCC 107298
||||||||||||||||||||||||| | |||||| |||| ||||||||||| |||| |
Sbjct 39662858 GAAGGCATTTTGTTCTGTCCAAGGATTCCATCCTCCTCCTTCCCTGTGCCCAAGCTCTAC 39662917
Query 107299 TGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATC 107358
| |||| ||||||||||||||| | ||||||||||||| || |||||| ||| |||
Sbjct 39662918 CCAGCTCCTATCCCATGAAGATGGTTTGGTGGAAGAAGAAACTCTGCCGGCAGCATTATC 39662977
Query 107359 TGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGT 107418
|||||||| ||||||||||||||||||||||| |||| |||||||| |||| || || |
Sbjct 39662978 TGTGGGCCGTGGGCTGCTATATGCTGCTGGCCATTGTGGCTCTGAGATTTTCTCTTAGAT 39663037
Query 107419 TTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTA 107478
| |||||||| | ||||| ||||||||||||||||||| || || || |||| ||||
Sbjct 39663038 TGAAATGTGACTTTAATTCCGTGGATCTGGAGTCCAGGGATTTTCAAAGCCAGCGCTGTC 39663097
Query 107479 GGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGA 107538
|||| || |||||||| |||||||||||| | || |||| |||||||||| || ||||
Sbjct 39663098 GGGATATCTTGTACAAGTCCCTGAAGCTGCCGGTAAGGAGACCCATCAACTGCTCCGGGA 39663157
Query 107539 TCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGA 107598
||| || ||||||| |||||||||| | ||| ||||| ||||||||||| || ||||
Sbjct 39663158 TCATCCGTGGGGACCGGGAAGCAGTGATAGGGGCTCTCCTGGACAACCTGGAGGTCAAGA 39663217
Query 107599 AAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCT 107658
| |||||| |||| |||| | | | | ||||||||||| |||||||||||||||| ||
Sbjct 39663218 AGAAGCGGCAGCCTTTCACAGACGCTGACTACCTCAACATGACCAGAGACTGTGAGCACT 39663277
Query 107659 TCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCA 107718
| |||||| ||||||||||||||| |||||||||||| ||||||||| |||||||||| |
Sbjct 39663278 TTAAGGCCAAAAGGAAGTTCATACGGTTCCCACTGAGCAAAGAAGAGTTAGACTTCCCTA 39663337
Query 107719 TTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCG 107778
|||| ||||| |||||| |||||||||||||||||||||||||| ||||||||||||| |
Sbjct 39663338 TTGCGTACTCTATGGTGATCCATGAGAAGATTGAAAACTTTGAAAGGCTGCTGCGAGCTG 39663397
Query 107779 TGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCA 107838
||||||||||||||||||||||||| |||| ||||||| |||||||||||| |||||||
Sbjct 39663398 TGTATGCCCCTCAGAACATATACTGCATCCATGTGGATGAGAAGTCCCCAGAAACTTTCA 39663457
Query 107839 AAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGG 107898
| ||||| |||||||| |||||||| || ||||| || |||||||||||||||||| |||
Sbjct 39663458 AGGAGGCAGTCAAGGCGATTATTTCATGTTTCCCTAACGTCTTCATGGCCAGTAAGCTGG 39663517
Query 107899 TCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACT 107958
| | |||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||
Sbjct 39663518 TTCGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACTTGAACTGTATGGAAGACT 39663577
Query 107959 TGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCA 108018
|||||| |||| ||||||||||||| ||||| || |||||||| ||||||||||| || |
Sbjct 39663578 TGCTCCGGAGCCCAGTGCCATGGAAATACTTCCTAAATACATGTGGGACAGACTTTCCTA 39663637
Query 108019 TAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGG 108078
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 39663638 TCAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATGG 39663697
Query 108079 AGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAG 108138
|||| ||| ||||| |||||| ||||| |||||||||||| | ||||||||||||||
Sbjct 39663698 AGTCAGAGATACCTACTGAGTACAAAAGGTCTCGCTGGAAATATCACTATGAGGTGACAG 39663757
Query 108139 ACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCA 108198
||||| || || || |||||||||||||||||||||||||||||||||| |||||||
Sbjct 39663758 ACACATTGCACATAACGGGCAAGATGAAGGACCCTCCCCCTGATAATTTACCTATGTTCA 39663817
Query 108199 CAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTA 108258
| ||||||||||| ||||||| ||||||| |||| |||||||||||||||| ||||| |
Sbjct 39663818 CGGGGAATGCCTACATTGTGGCTTCTCGAGGCTTTATCCAACATGTCTTAGAAAACCCCA 39663877
Query 108259 AATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGG 108318
|||||| | |||| |||||||||||||||||||||||||||| || |||||||||||||
Sbjct 39663878 AATCCCGACAACTGATTGAATGGGTCAAAGACACCTATAGCCCAGATGAACACCTCTGGG 39663937
Query 108319 CCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACA 108378
|||||||||| ||||| || |||||||||||||||||||| ||||||||||| |||||
Sbjct 39663938 CCACCCTTCACCGTGCACCATGGATGCCTGGCTCTGTTCCCTACCACCCCAAGTTTCACA 39663997
Query 108379 TCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCA 108438
|||| |||||||||||||| |||||||| |||||||||||| |||| |||||| | |||
Sbjct 39663998 TCTCTGACATGACTGCCATTGCCAGGCTGGTCAAGTGGCAGGACCATGAGGGAAACATCA 39664057
Query 108439 GCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACG 108498
| |||||||| ||||||| ||| |||||||||||||| | | |||| |||| ||||| |
Sbjct 39664058 GTATGGGGGCACCTTATGAACCTTGCTCTGGAATCCACCAGCGGGCTGTCTGTATTTATG 39664117
Query 108499 GGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACC 108558
| | ||||||||| |||||||||| |||||||||||||| ||||| ||||| |||||||
Sbjct 39664118 GAACTGGGGACCTGCACTGGATTCTTCAGAACCATCACCTGTTGGCCAACAAATTTGACC 39664177
Query 108559 CGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCT 108618
| | |||||||||||| || || |||||||||||||||||| ||||||||||||||||||
Sbjct 39664178 CAAAGGTGGATGATAATGTTCTTCAGTGCTTAGAAGAGTACTTACGTCATAAGGCCATCT 39664237
Query 108619 ATGGGACTGAACTTTGAGCTGCACTGTG 108646
| ||||||||||| ||| | | |||||
Sbjct 39664238 ACGGGACTGAACTCGGAGATACCCTGTG 39664265
>seq82
Length=9772303
Score = 165 bits (182), Expect = 6e-36
Identities = 581/895 (65%), Gaps = 47/895 (5%)
Strand=Plus/Minus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || |||||||||||| || || || || || || || || ||||| ||| | ||
Sbjct 5824514 CCCCTCAGTAAAGAAGAGGCGGAGTTTCCAATAGCGTATTCTATAGTGGTTCATCACAAA 5824455
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||||| |||| |||| ||| | ||| | ||| |||||||| | ||||| |
Sbjct 5824454 ATTGAAATGCTTGATAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATT 5824395
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|||||||| || || || | || | |||||| | | |||| |||||
Sbjct 5824394 CACGTGGACAAAAAATCAGAGGATTCCTTTTTGGCGGCGGTGATTGGCATTGCCTCCTGT 5824335
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
||| || ||||| |||||||| || ||| ||||| || || || ||| |
Sbjct 5824334 TTCAGTAACGTCTTTGTGGCCAGTCAGCTGGAGAGTGTGGTGTACGCATCATGGAGTCGG 5824275
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGC-TCAGTGCCA--TGGAAG 107984
|| || |||||||| ||||| ||| | ||| ||| | ||| | ||||| ||||||
Sbjct 5824274 GTTCAGGCTGACCTCAACTGCATGCAGGAC---CTCTACAGCATGAGTGCAGACTGGAAG 5824218
Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044
||||| | ||| ||||| | || || ||||| || ||||| || || ||| |
Sbjct 5824217 TACTTGATCAATCTTTGCGGTATGGATTTTCCCATTAAAACCAACCTGGAAATTGTCAGG 5824158
Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCC 108101
|||||| ||| | ||| | |||| | || ||||| | || || |
Sbjct 5824157 AAGCTCAAGTCGTTAATGGGAGAAAACAACCTAGAAACTGAGAGAATGCCATCCAAT--- 5824101
Query 108102 aaaaaaaaTCGCTGGAAA--------TAC---CGCTA-TG---AGGTGACAGACACACTG 108146
|||||| | | |||||| ||| || || || || ||||| ||||| |
Sbjct 5824100 AAAAAAGAAAGGTGGAAAAAGCATTATACAGTCGTTAATGGAAAGCTGACAAACACAGGG 5824041
Query 108147 TACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAAT 108206
|| ||| ||| | |||||| | ||| | ||| |||| | || | |
Sbjct 5824040 ------ACTGACAAAATGCA---CCCTCCTCTTGAAAC---ACCTCTGTTTTCGGGCAGT 5823993
Query 108207 GCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAA 108266
||||||||||||| | | | | | ||| | |||| |||| || ||| ||||
Sbjct 5823992 GCCTATTTTGTGGTCAGTAGGGAATATGTGGAGTATGTGCTAGAGAATGAAAAAATCCAA 5823933
Query 108267 AGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTT 108326
| | | || |||| ||||||||| || ||||| || || | ||||||||||| |||
Sbjct 5823932 AAGTTTATGGAGTGGGCCAAAGACACGTACAGCCCAGATGAGTATCTCTGGGCCACTCTT 5823873
Query 108327 CAGCGTGCTCCGTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTC 108382
||| | | ||| || | | || ||||| | |||| ||| | |||||| |||| ||
Sbjct 5823872 CAGAG-GATCCCTGAAGTCCCAGGCTCACTGTCCTTAAGCTAT---AAGTATGACATGTC 5823817
Query 108383 AGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCAT 108442
|||||| ||| || || ||| | ||||||||||||||| || || || || ||
Sbjct 5823816 TGACATGCATGCAATTGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTTTCCAA 5823757
Query 108443 GGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGC 108502
||| || || || | |||||| || |||| | | || | ||| ||| || ||
Sbjct 5823756 GGGCGCCCCCTACCCCCCCTGCAGCGGGGTCCACGTGCGCTCCGTGTGCGTTTTTGGAGC 5823697
Query 108503 CGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
|| ||| || ||||||| || | | || ||||| || || || |||||||||
Sbjct 5823696 AGGTGACTTGAACTGGATGCTGCGCATGCACCACCTGTTTGCCAATAAGTTTGAC 5823642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348255697148238
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