Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq6 1773 0.0 seq82 165 6e-36 >seq6 Length=61284144 Score = 1773 bits (1966), Expect = 0.0 Identities = 1344/1588 (85%), Gaps = 26/1588 (2%) Strand=Plus/Plus Query 107085 CCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACA--------- 107135 ||||| ||| |||| ||||| || |||||||| ||| |||||| || Sbjct 39662678 CCCAGGATGCTCAGCTAGTTTGTAGGGTCAGGTTATAGACCTCCATCAGCAGGCTGGTGT 39662737 Query 107136 ---AGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTA 107192 ||| || |||||||| |||||||||||||||||||||| |||||| || ||| ||| Sbjct 39662738 AAGAGGTTCCTAGGCAGGTCTTGACTGAGGATATTTGTCTAGAGAAGAAATATATTTTTG 39662797 Query 107193 CCATCACTCTGGAGTTGAACTTGATGTTCTGG-----AT---------TAGTTTGTAATT 107238 |||||||| |||||||||||||||||||| | || |||||||||| | Sbjct 39662798 CCATCACTTTGGAGTTGAACTTGATGTTCCTGTGAGCATGTTCAGGGATAGTTTGTAACT 39662857 Query 107239 AAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCTCC 107298 ||||||||||||||||||||||||| | |||||| |||| ||||||||||| |||| | Sbjct 39662858 GAAGGCATTTTGTTCTGTCCAAGGATTCCATCCTCCTCCTTCCCTGTGCCCAAGCTCTAC 39662917 Query 107299 TGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATC 107358 | |||| ||||||||||||||| | ||||||||||||| || |||||| ||| ||| Sbjct 39662918 CCAGCTCCTATCCCATGAAGATGGTTTGGTGGAAGAAGAAACTCTGCCGGCAGCATTATC 39662977 Query 107359 TGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGT 107418 |||||||| ||||||||||||||||||||||| |||| |||||||| |||| || || | Sbjct 39662978 TGTGGGCCGTGGGCTGCTATATGCTGCTGGCCATTGTGGCTCTGAGATTTTCTCTTAGAT 39663037 Query 107419 TTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTA 107478 | |||||||| | ||||| ||||||||||||||||||| || || || |||| |||| Sbjct 39663038 TGAAATGTGACTTTAATTCCGTGGATCTGGAGTCCAGGGATTTTCAAAGCCAGCGCTGTC 39663097 Query 107479 GGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGA 107538 |||| || |||||||| |||||||||||| | || |||| |||||||||| || |||| Sbjct 39663098 GGGATATCTTGTACAAGTCCCTGAAGCTGCCGGTAAGGAGACCCATCAACTGCTCCGGGA 39663157 Query 107539 TCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGA 107598 ||| || ||||||| |||||||||| | ||| ||||| ||||||||||| || |||| Sbjct 39663158 TCATCCGTGGGGACCGGGAAGCAGTGATAGGGGCTCTCCTGGACAACCTGGAGGTCAAGA 39663217 Query 107599 AAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCT 107658 | |||||| |||| |||| | | | | ||||||||||| |||||||||||||||| || Sbjct 39663218 AGAAGCGGCAGCCTTTCACAGACGCTGACTACCTCAACATGACCAGAGACTGTGAGCACT 39663277 Query 107659 TCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCA 107718 | |||||| ||||||||||||||| |||||||||||| ||||||||| |||||||||| | Sbjct 39663278 TTAAGGCCAAAAGGAAGTTCATACGGTTCCCACTGAGCAAAGAAGAGTTAGACTTCCCTA 39663337 Query 107719 TTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCG 107778 |||| ||||| |||||| |||||||||||||||||||||||||| ||||||||||||| | Sbjct 39663338 TTGCGTACTCTATGGTGATCCATGAGAAGATTGAAAACTTTGAAAGGCTGCTGCGAGCTG 39663397 Query 107779 TGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCA 107838 ||||||||||||||||||||||||| |||| ||||||| |||||||||||| ||||||| Sbjct 39663398 TGTATGCCCCTCAGAACATATACTGCATCCATGTGGATGAGAAGTCCCCAGAAACTTTCA 39663457 Query 107839 AAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGG 107898 | ||||| |||||||| |||||||| || ||||| || |||||||||||||||||| ||| Sbjct 39663458 AGGAGGCAGTCAAGGCGATTATTTCATGTTTCCCTAACGTCTTCATGGCCAGTAAGCTGG 39663517 Query 107899 TCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACT 107958 | | |||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| Sbjct 39663518 TTCGGGTGGTTTATGCCTCCTGGTCCAGGGTGCAGGCTGACTTGAACTGTATGGAAGACT 39663577 Query 107959 TGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCA 108018 |||||| |||| ||||||||||||| ||||| || |||||||| ||||||||||| || | Sbjct 39663578 TGCTCCGGAGCCCAGTGCCATGGAAATACTTCCTAAATACATGTGGGACAGACTTTCCTA 39663637 Query 108019 TAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGG 108078 | ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 39663638 TCAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTATGG 39663697 Query 108079 AGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAG 108138 |||| ||| ||||| |||||| ||||| |||||||||||| | |||||||||||||| Sbjct 39663698 AGTCAGAGATACCTACTGAGTACAAAAGGTCTCGCTGGAAATATCACTATGAGGTGACAG 39663757 Query 108139 ACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCA 108198 ||||| || || || |||||||||||||||||||||||||||||||||| ||||||| Sbjct 39663758 ACACATTGCACATAACGGGCAAGATGAAGGACCCTCCCCCTGATAATTTACCTATGTTCA 39663817 Query 108199 CAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTA 108258 | ||||||||||| ||||||| ||||||| |||| |||||||||||||||| ||||| | Sbjct 39663818 CGGGGAATGCCTACATTGTGGCTTCTCGAGGCTTTATCCAACATGTCTTAGAAAACCCCA 39663877 Query 108259 AATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGG 108318 |||||| | |||| |||||||||||||||||||||||||||| || ||||||||||||| Sbjct 39663878 AATCCCGACAACTGATTGAATGGGTCAAAGACACCTATAGCCCAGATGAACACCTCTGGG 39663937 Query 108319 CCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACA 108378 |||||||||| ||||| || |||||||||||||||||||| ||||||||||| ||||| Sbjct 39663938 CCACCCTTCACCGTGCACCATGGATGCCTGGCTCTGTTCCCTACCACCCCAAGTTTCACA 39663997 Query 108379 TCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCA 108438 |||| |||||||||||||| |||||||| |||||||||||| |||| |||||| | ||| Sbjct 39663998 TCTCTGACATGACTGCCATTGCCAGGCTGGTCAAGTGGCAGGACCATGAGGGAAACATCA 39664057 Query 108439 GCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACG 108498 | |||||||| ||||||| ||| |||||||||||||| | | |||| |||| ||||| | Sbjct 39664058 GTATGGGGGCACCTTATGAACCTTGCTCTGGAATCCACCAGCGGGCTGTCTGTATTTATG 39664117 Query 108499 GGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACC 108558 | | ||||||||| |||||||||| |||||||||||||| ||||| ||||| ||||||| Sbjct 39664118 GAACTGGGGACCTGCACTGGATTCTTCAGAACCATCACCTGTTGGCCAACAAATTTGACC 39664177 Query 108559 CGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCT 108618 | | |||||||||||| || || |||||||||||||||||| |||||||||||||||||| Sbjct 39664178 CAAAGGTGGATGATAATGTTCTTCAGTGCTTAGAAGAGTACTTACGTCATAAGGCCATCT 39664237 Query 108619 ATGGGACTGAACTTTGAGCTGCACTGTG 108646 | ||||||||||| ||| | | ||||| Sbjct 39664238 ACGGGACTGAACTCGGAGATACCCTGTG 39664265 >seq82 Length=9772303 Score = 165 bits (182), Expect = 6e-36 Identities = 581/895 (65%), Gaps = 47/895 (5%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| || || || || || || || || ||||| ||| | || Sbjct 5824514 CCCCTCAGTAAAGAAGAGGCGGAGTTTCCAATAGCGTATTCTATAGTGGTTCATCACAAA 5824455 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | ||||| | Sbjct 5824454 ATTGAAATGCTTGATAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATT 5824395 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || || || | || | |||||| | | |||| ||||| Sbjct 5824394 CACGTGGACAAAAAATCAGAGGATTCCTTTTTGGCGGCGGTGATTGGCATTGCCTCCTGT 5824335 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || ||||| |||||||| || ||| ||||| || || || ||| | Sbjct 5824334 TTCAGTAACGTCTTTGTGGCCAGTCAGCTGGAGAGTGTGGTGTACGCATCATGGAGTCGG 5824275 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGC-TCAGTGCCA--TGGAAG 107984 || || |||||||| ||||| ||| | ||| ||| | ||| | ||||| |||||| Sbjct 5824274 GTTCAGGCTGACCTCAACTGCATGCAGGAC---CTCTACAGCATGAGTGCAGACTGGAAG 5824218 Query 107985 TACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTG 108044 ||||| | ||| ||||| | || || ||||| || ||||| || || ||| | Sbjct 5824217 TACTTGATCAATCTTTGCGGTATGGATTTTCCCATTAAAACCAACCTGGAAATTGTCAGG 5824158 Query 108045 GCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCC 108101 |||||| ||| | ||| | |||| | || ||||| | || || | Sbjct 5824157 AAGCTCAAGTCGTTAATGGGAGAAAACAACCTAGAAACTGAGAGAATGCCATCCAAT--- 5824101 Query 108102 aaaaaaaaTCGCTGGAAA--------TAC---CGCTA-TG---AGGTGACAGACACACTG 108146 |||||| | | |||||| ||| || || || || ||||| ||||| | Sbjct 5824100 AAAAAAGAAAGGTGGAAAAAGCATTATACAGTCGTTAATGGAAAGCTGACAAACACAGGG 5824041 Query 108147 TACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAAT 108206 || ||| ||| | |||||| | ||| | ||| |||| | || | | Sbjct 5824040 ------ACTGACAAAATGCA---CCCTCCTCTTGAAAC---ACCTCTGTTTTCGGGCAGT 5823993 Query 108207 GCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAA 108266 ||||||||||||| | | | | | ||| | |||| |||| || ||| |||| Sbjct 5823992 GCCTATTTTGTGGTCAGTAGGGAATATGTGGAGTATGTGCTAGAGAATGAAAAAATCCAA 5823933 Query 108267 AGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTT 108326 | | | || |||| ||||||||| || ||||| || || | ||||||||||| ||| Sbjct 5823932 AAGTTTATGGAGTGGGCCAAAGACACGTACAGCCCAGATGAGTATCTCTGGGCCACTCTT 5823873 Query 108327 CAGCGTGCTCCGTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTC 108382 ||| | | ||| || | | || ||||| | |||| ||| | |||||| |||| || Sbjct 5823872 CAGAG-GATCCCTGAAGTCCCAGGCTCACTGTCCTTAAGCTAT---AAGTATGACATGTC 5823817 Query 108383 AGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCAT 108442 |||||| ||| || || ||| | ||||||||||||||| || || || || || Sbjct 5823816 TGACATGCATGCAATTGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACGTTTCCAA 5823757 Query 108443 GGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGC 108502 ||| || || || | |||||| || |||| | | || | ||| ||| || || Sbjct 5823756 GGGCGCCCCCTACCCCCCCTGCAGCGGGGTCCACGTGCGCTCCGTGTGCGTTTTTGGAGC 5823697 Query 108503 CGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || ||| || ||||||| || | | || ||||| || || || ||||||||| Sbjct 5823696 AGGTGACTTGAACTGGATGCTGCGCATGCACCACCTGTTTGCCAATAAGTTTGAC 5823642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348255697148238