Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq8 100 2e-16 >seq8 Length=46046909 Score = 100 bits (110), Expect = 2e-16 Identities = 190/280 (68%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 20495 TGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTA 20554 ||||||| || |||| ||||| || || || ||||| || || ||||| ||||| | | Sbjct 12968674 TGGGTGTGCCCCTCAACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACACATCA 12968615 Query 20555 CAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATC 20614 | | | || | |||||||| || || || | ||||| || ||||||||||| |||| Sbjct 12968614 CCGGCCTGAAGCCAGGTGACTTTGTACATACTTTGGGAGATGCACATATTTACCTGAATC 12968555 Query 20615 ATATAGAACCTTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCA 20674 | | || || | ||| | ||||| ||| |||| | | ||||||| || | Sbjct 12968554 ACGTTGACCCACTGAAAATGCAGTTTCAGCGAGAACCGAGGCCTTTCCCAAAGCTCAAAA 12968495 Query 20675 TTACTCGAACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTT 20734 | ||||| ||| | | ||| | || || || ||||| | ||| | | ||||| | Sbjct 12968494 TCCTTCGAAAAGTTGAGAAAATTGATGACTTCAAGGCTGAAGTCTTTCAGCTTGAAGGGT 12968435 Query 20735 ATAATCCCCATAATTCAATTCCAATGGAAATGTCTGTTTA 20774 | ||||| || | ||| |||||||||| ||||||| Sbjct 12968434 ACAATCCACACCCGACTATTAAAATGGAAATGGCTGTTTA 12968395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399168981575215