Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq60 105 6e-18 >seq60 Length=14545593 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| || || || || || ||||| || | || ||||||| ||||||||| | Sbjct 8429094 CCTCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCT 8429035 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| || ||||||||||| | Sbjct 8429034 TGAGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 8428975 Query 14346 CTATTAATCGTTCTCC 14361 ||| | ||| ||||| Sbjct 8428974 CTACAACTCGCTCTCC 8428959 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || ||| | | || || || ||||| | Sbjct 8430736 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGG-GCTCGACATCACTCCCATCCT 8430678 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 8430677 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 8430618 Query 13975 CATAAAATCAAATGGATTT 13993 |||||| |||||||||||| Sbjct 8430617 CATAAAGTCAAATGGATTT 8430599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || ||||| || | ||||||||||||||||||||||||||||| || || || Sbjct 8427075 AATGTAAGTGTCAATGAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 8427016 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | || |||| Sbjct 8427015 GAAGCCATAGAAACAGCGGGCCTCTG 8426990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482326987489160