Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq60 105 6e-18
>seq60
Length=14545593
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| || || || || || ||||| || | || ||||||| ||||||||| |
Sbjct 8429094 CCTCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCT 8429035
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||| | || || || || |||||||| ||||| || ||||||||||| |
Sbjct 8429034 TGAGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 8428975
Query 14346 CTATTAATCGTTCTCC 14361
||| | ||| |||||
Sbjct 8428974 CTACAACTCGCTCTCC 8428959
Score = 100 bits (110), Expect = 3e-16
Identities = 107/139 (77%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13914
|| || ||| |||| || | |||| ||| || ||| | | || || || ||||| |
Sbjct 8430736 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGG-GCTCGACATCACTCCCATCCT 8430678
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| ||
Sbjct 8430677 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 8430618
Query 13975 CATAAAATCAAATGGATTT 13993
|||||| ||||||||||||
Sbjct 8430617 CATAAAGTCAAATGGATTT 8430599
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532
|||||| || ||||| || | ||||||||||||||||||||||||||||| || || ||
Sbjct 8427075 AATGTAAGTGTCAATGAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 8427016
Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558
|| ||||| ||||| | || ||||
Sbjct 8427015 GAAGCCATAGAAACAGCGGGCCTCTG 8426990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482326987489160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |