Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq48 140 4e-28 seq60 123 3e-23 seq28 120 4e-22 seq35 107 2e-18 >seq48 Length=18573065 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||||||||| || |||||||| ||||| | Sbjct 2886231 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATG 2886290 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 |||||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 2886291 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2886350 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 2886351 CTGTTTCTTACACCATA 2886367 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || |||||||| || | || || | | | ||| || || || || || || | Sbjct 2890558 CATAGGTTTCATATGGACCATACTCCTTGGACAAGTCACAGCTGGCTTCCAAGGCTCCAT 2890617 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||||||||||||||| | |||||| || || || || || || ||||| |||| Sbjct 2890618 AATAAATGGTTTCAAAGATTTGCTTATTCAGCAACTGGGCCTCTGGACTCTCAAAAGGAT 2890677 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 2890678 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 2890737 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 2890738 GTTTATTTGA 2890747 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | ||| |||||||| ||||| | ||| || | || || || || || || | Sbjct 2907862 CACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGACACAGCAATCCTTGCTGCCAGGA 2907921 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 |||||||||| || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 2907922 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 2907981 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 2907982 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2908027 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| ||||||||||| || | || || || || | | Sbjct 2895432 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 2895491 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 2895492 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCCAAATGCCA 2895551 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 2895552 AGGCTCCAGGTAAATAGC 2895569 >seq60 Length=14545593 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | || || ||||||||||| |||||||| || || || || | Sbjct 8429094 CCTCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCT 8429035 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||||||||| ||||||||||||| Sbjct 8429034 TGAGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 8428975 Query 33724 CAATAAGTCTCTCTCC 33739 | | || || |||||| Sbjct 8428974 CTACAACTCGCTCTCC 8428959 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||| || || | |||||||||||||| || || |||||||| ||||| Sbjct 8427081 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGC 8427022 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || || || |||||||| | ||||| |||| ||| |||||| | ||| ||||| Sbjct 8427021 AATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTAAAACGTTC 8426962 >seq28 Length=27476936 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | ||| ||| |||||||||| | |||| |||||||| ||| Sbjct 22840372 GTTACTTTCTATGATGTACATATTGTTCTACAAGCTTTTCTACTGACAACTGCAGTATTT 22840313 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| || |||||||||||| |||||||||||||| ||| ||| | |||| Sbjct 22840312 CTTGGTTTGACTGTATATACTCTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 22840254 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 188375 TTCGGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAAT 188434 || |||||| | || ||||||| |||||||||||| |||||||||| |||||||| || Sbjct 22845603 TTTGGATCTTTCGGTATGATTTTGGCATTGACTTTAAACAGACATAAGCATCCCCTTAAC 22845544 Query 188435 CTGTACCTACTTTGTGGATTT 188455 |||||||| |||| ||||||| Sbjct 22845543 CTGTACCTGCTTTTTGGATTT 22845523 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||| || Sbjct 22857221 TGCTCCTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCTTCGGCCAGCGTGTAC 22857162 Query 188232 ATACGAATGG 188241 || || |||| Sbjct 22857161 ATCCGCATGG 22857152 >seq35 Length=24201928 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 13540743 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 13540802 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 13540803 AGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 13540861 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 |||||||||||||| ||||||||||||||||||||||| || || || || |||||| Sbjct 13547396 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGATAAAA 13547455 Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074 || || || |||| ||| || || ||||| | | || ||| || |||| Sbjct 13547456 TACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 13547504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629793296913360