Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq35 120 3e-22
seq60 116 3e-21
seq48 105 6e-18
>seq35
Length=24201928
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||||||||| || | ||| ||||| | |||| ||| |
Sbjct 13540741 CTTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 13540800
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| |
Sbjct 13540801 TTAGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 13540860
Query 11772 CTACTACTCTTTCTCC 11787
| || || ||||| ||
Sbjct 13540861 CCACCACCCTTTCCCC 13540876
>seq60
Length=14545593
Score = 116 bits (128), Expect = 3e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || || ||||| ||||| || | |||||||||| ||||||||| ||
Sbjct 8429092 TCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCTTG 8429033
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| || ||||||||||| ||||| ||||| || ||||| |||
Sbjct 8429032 AGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGGCT 8428973
Query 11774 ACTACTCTTTCTCC 11787
|| |||| |||||
Sbjct 8428972 ACAACTCGCTCTCC 8428959
>seq48
Length=18573065
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | || || || ||||| ||||| |||||||||
Sbjct 2886231 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATG 2886290
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | || || |||| || || |||||||||||||| || || || |
Sbjct 2886291 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2886350
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 2886351 CTGTTTCTTACACCAT 2886366
Score = 89.7 bits (98), Expect = 5e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922
|||| || || || ||||| || |||||||| | || |||| | | | |||| ||
Sbjct 2883768 TCCAGCCATAGAAGTGCATGCTAGTCAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 2883827
Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982
||| || || |||||||| ||||| || ||||| ||||||||||| | | ||| ||
Sbjct 2883828 TCAAAGACTGGCTTTGATCAATAAAAGCGCCTCTCTCGGCTGCCATCTTGAGAATGGTTT 2883887
Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019
| ||||| || ||||| || || ||||| | ||| ||
Sbjct 2883888 TCTGAGAAATTTCCCACACAGTCTTATAAAGTTGCTT 2883924
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472
|| || || || || | || ||||| ||||| | ||||| || || || | | ||
Sbjct 2903314 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 2903373
Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532
|||||||| || || |||| ||||| | | |||||| || | |||||||||||| | |
Sbjct 2903374 TATGTTTCAATAGCAGCATCAATATCTTCACTGTGAATCCCCACAGATACCCTCATCAAC 2903433
Query 38533 ATATGTTGTGGTCTTTCT 38550
||||| ||||||||||||
Sbjct 2903434 ATATGCTGTGGTCTTTCT 2903451
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468506720799280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |