Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq28 183 4e-41 seq48 143 4e-29 seq60 129 8e-25 seq6 113 6e-20 seq35 102 1e-16 >seq28 Length=27476936 Score = 183 bits (202), Expect = 4e-41 Identities = 155/191 (81%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | | ||||||| | | ||||| |||| ||| | |||||||||||||||| Sbjct 22833188 TTTTTATTAACTGCATCCAAAAACCGCAACAGGTGCAGGAATAAATTGATGATATCCAAG 22833247 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| |||| | ||||| ||||| ||||||||||| ||| ||| || |||||||| Sbjct 22833248 TAGAGGCTGATGGCAGCTAATACATACTCTTCAGGCGACAGCCGATGCATCAGTGAGTGT 22833307 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 |||||||||| ||||||||||||||| | ||||||||| | ||||| || ||||| |||| Sbjct 22833308 GTGTCATAGACAATGAATCCGCAGAAAAGAAGGGCCCCTAGAGCAGCCAAGACCAACTCC 22833367 Query 9411 ACTGTTTCACT 9421 | ||| ||||| Sbjct 22833368 AATGTCTCACT 22833378 Score = 143 bits (158), Expect = 4e-29 Identities = 103/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 ccTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| ||||||||||||||| |||||| | ||||| Sbjct 22840254 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTATATACAGTCAAACCAAGA 22840313 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||| ||||| | |||||||| | ||| | ||| ||||||||||||||||| Sbjct 22840314 AATACTGCAGTTGTCAGTAGAAAAGCTTGTAGAACAATATGTACATCATAGAAAGTAAC 22840372 Score = 96.9 bits (106), Expect = 5e-15 Identities = 88/108 (81%), Gaps = 5/108 (5%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||| ||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 22857152 CCATGCGGATGTACACGCTGGCCGAAGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 22857211 Query 9907 TGGAGGAGCACGCGTAGAGG--CTCGGCATGG-CCATGGCGGCGCAGA 9951 |||||||||| | || | || ||||| ||| ||||| | |||||| Sbjct 22857212 TGGAGGAGCAGGGGTGGCGGGCGTCGGCGTGGCCCATGTC--CGCAGA 22857257 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 9632 AAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAA 9691 ||||||| |||||||||| | || |||||||| |||||||||| |||||||||||| || Sbjct 22845523 AAATCCAAAAAGCAGGTACAGGTTAAGGGGATGCTTATGTCTGTTTAAAGTCAATGCCAA 22845582 Query 9692 AATCAAGCCTATAGAT 9707 ||||| || | |||| Sbjct 22845583 AATCATACCGAAAGAT 22845598 >seq48 Length=18573065 Score = 143 bits (158), Expect = 4e-29 Identities = 114/137 (83%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||||||||| || |||||||| ||||| | Sbjct 2886231 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATG 2886290 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 |||||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 2886291 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2886350 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 2886351 CTGTTTCTTACACCATA 2886367 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | ||| || || || || || || || | | Sbjct 2907862 CACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGACACAGCAATCCTTGCTGCCAGGA 2907921 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 |||||||||| || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 2907922 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 2907981 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 2907982 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2908027 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || ||||| || | || || | | ||||| || || || || || || | Sbjct 2890558 CATAGGTTTCATATGGACCATACTCCTTGGACAAGTCACAGCTGGCTTCCAAGGCTCCAT 2890617 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||||||||||||| ||||| | |||||| || || || || | || ||||| |||| Sbjct 2890618 AATAAATGGTTTCAAAGATTTGCTTATTCAGCAACTGGGCCTCTGGACTCTCAAAAGGAT 2890677 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 2890678 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 2890737 Query 65599 TCTTATTAGA 65608 ||||| || Sbjct 2890738 GTTTATTTGA 2890747 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 2895432 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 2895491 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 2895492 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCCAAATGCCA 2895551 Query 66176 CGGTTCCAAGTATATGGC 66193 || |||| ||| || || Sbjct 2895552 AGGCTCCAGGTAAATAGC 2895569 >seq60 Length=14545593 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | || |||||||||||||| |||||||| || || || || | Sbjct 8429094 CCTCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCT 8429035 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| |||||||| ||||| ||||||| Sbjct 8429034 TGAGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 8428975 Query 36300 CAATAAGTCTCTCTCC 36315 | | || || |||||| Sbjct 8428974 CTACAACTCGCTCTCC 8428959 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | |||||||||||||| || || |||||||| ||||| Sbjct 8427081 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGC 8427022 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||| || || |||||||| | ||||| |||| ||| |||||| | ||| ||||| Sbjct 8427021 AATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTAAAACGTTC 8426962 >seq6 Length=61284144 Score = 113 bits (124), Expect = 6e-20 Identities = 500/778 (64%), Gaps = 24/778 (3%) Strand=Plus/Minus Query 35958 AAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTT 36017 ||| ||| |||| || | ||| | || ||||| ||||| |||||||| || | ||| Sbjct 57314837 AAACTTTGCTAAAACCAAGTTCTGGCATAAATCTGTCTGCTACAAATTCCATGT---TTT 57314781 Query 36018 TCATCATTTCA---CAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATT 36074 | ||||| | ||||||||||| |||| | | |||| || | || || || | Sbjct 57314780 GCCTCATTAAAATGCAATTCATTCCAATAAACCACAAGGCAAGA-CCTCGGTTAGGAACT 57314722 Query 36075 CTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGAT 36134 ||||||| || | | | | || || | ||||| ||| || ||| | Sbjct 57314721 CTTGTTCTATCTTAATAACACCGATAATTATTTCTTTTACTTTTTACTCTGAAGGTTTGT 57314662 Query 36135 ACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAA 36194 |||| || | |||||| || | || || || || ||||||| ||| || |||| | | Sbjct 57314661 ACAAGAAGTATTTAAATATTAGGCAGGCAAAGTCACAGTGTAAACC-TCA-CTCTGCCTA 57314604 Query 36195 TTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 36254 |||||| |||||||| |||| ||| || || | || || || | ||| Sbjct 57314603 GTAATTCATTGGAAAATGTGATCGTAGGCCTTGATCCTCATTTCTTGAGGTAGAATGCTA 57314544 Query 36255 ACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTC 36314 ||||| | |||| ||| ||||| | |||||| ||||||| | | |||| Sbjct 57314543 GTGCAAAAGCGCCAGTGGAGAT--TTCCTCC-ACTGCCCCAAAGGCTACCACCTGTTCTC 57314487 Query 36315 CATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 36374 ||||| || || ||| ||| | || || ||||||||| ||||| | Sbjct 57314486 CATAAATAGCT---TCTTGTCCCCAACCAGGT--CCTGTCAGCCTTCTTT---ACACAGG 57314435 Query 36375 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 36434 |||| || || |||||| |||||| || | || || | |||||||| | || | Sbjct 57314434 GCATAGTTTCAATAGCACGGAAGAGAAAGGCCTCCTCTTTGCCATCTTTAA--TGCGTGT 57314377 Query 36435 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 36494 |||| | ||||| || ||||| ||||| | ||| || || | ||||| || ||| Sbjct 57314376 CAATAAGGAGACTCTATATTTCAGAATGCAAGTTGTCTGTGTCACCTTGAAG-CCACAGA 57314318 Query 36495 AACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCA 36554 ||| | | || || ||||||||||||| || || ||||| | | |||||| Sbjct 57314317 AACGTGTTGCTTCTGTAATCTGTACTTTTGGACTAAATCACTGCACCGGGGTTTCATATC 57314258 Query 36555 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTG 36614 | ||| ||||| |||||| || ||| | ||| |||||||| | | || | Sbjct 57314257 CAGCTCCATCACTTACTGCAATGAAAGCCCGAGCCTGTGATATAAAATCTCTCTCCACAG 57314198 Query 36615 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 36674 | | || ||||| | | | || || || | ||| || || ||||||||| || Sbjct 57314197 GCTTCAG-GGCTTCCAGTGCTGAAAGTCCTTGGAGAGATCTACCTCCTCCACTGTCTCAA 57314139 Query 36675 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 | || ||||| || || | ||||| | ||| ||| |||| |||| | |||||||| Sbjct 57314138 AGGAAGCCTCAGCTTTCTGGTACATCTGCCAAATGCCATGGTATTTGACAGGAAAAAT 57314081 >seq35 Length=24201928 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| || ||||| |||||||| ||||| || || | || || Sbjct 13540743 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 13540802 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 13540803 AGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 13540861 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 |||||||||||||| ||||| ||||||||||||||||| || || || || |||||| Sbjct 13547396 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGATAAAA 13547455 Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 36650 || || || | || ||| || || ||||| | | || ||| || |||| Sbjct 13547456 TACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 13547504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658147402757080