Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq28 183 4e-41
seq48 143 4e-29
seq60 129 8e-25
seq6 113 6e-20
seq35 102 1e-16
>seq28
Length=27476936
Score = 183 bits (202), Expect = 4e-41
Identities = 155/191 (81%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290
|| |||||| | | ||||||| | | ||||| |||| ||| | ||||||||||||||||
Sbjct 22833188 TTTTTATTAACTGCATCCAAAAACCGCAACAGGTGCAGGAATAAATTGATGATATCCAAG 22833247
Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350
|||| |||| | ||||| ||||| ||||||||||| ||| ||| || ||||||||
Sbjct 22833248 TAGAGGCTGATGGCAGCTAATACATACTCTTCAGGCGACAGCCGATGCATCAGTGAGTGT 22833307
Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410
|||||||||| ||||||||||||||| | ||||||||| | ||||| || ||||| ||||
Sbjct 22833308 GTGTCATAGACAATGAATCCGCAGAAAAGAAGGGCCCCTAGAGCAGCCAAGACCAACTCC 22833367
Query 9411 ACTGTTTCACT 9421
| ||| |||||
Sbjct 22833368 AATGTCTCACT 22833378
Score = 143 bits (158), Expect = 4e-29
Identities = 103/119 (87%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 9480 ccTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| |||||||||||||| ||||||||||||||| |||||| | |||||
Sbjct 22840254 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGATTGTAGAGTATATACAGTCAAACCAAGA 22840313
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
|| |||||||| ||||| | |||||||| | ||| | ||| |||||||||||||||||
Sbjct 22840314 AATACTGCAGTTGTCAGTAGAAAAGCTTGTAGAACAATATGTACATCATAGAAAGTAAC 22840372
Score = 96.9 bits (106), Expect = 5e-15
Identities = 88/108 (81%), Gaps = 5/108 (5%)
Strand=Plus/Plus
Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906
|||| || |||| ||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct 22857152 CCATGCGGATGTACACGCTGGCCGAAGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 22857211
Query 9907 TGGAGGAGCACGCGTAGAGG--CTCGGCATGG-CCATGGCGGCGCAGA 9951
|||||||||| | || | || ||||| ||| ||||| | ||||||
Sbjct 22857212 TGGAGGAGCAGGGGTGGCGGGCGTCGGCGTGGCCCATGTC--CGCAGA 22857257
Score = 84.2 bits (92), Expect = 3e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 9632 AAATCCACAAAGCAGGTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAA 9691
||||||| |||||||||| | || |||||||| |||||||||| |||||||||||| ||
Sbjct 22845523 AAATCCAAAAAGCAGGTACAGGTTAAGGGGATGCTTATGTCTGTTTAAAGTCAATGCCAA 22845582
Query 9692 AATCAAGCCTATAGAT 9707
||||| || | ||||
Sbjct 22845583 AATCATACCGAAAGAT 22845598
>seq48
Length=18573065
Score = 143 bits (158), Expect = 4e-29
Identities = 114/137 (83%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| ||||| ||||| ||||||||||| || |||||||| ||||| |
Sbjct 2886231 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATG 2886290
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
|||||||||||||||||||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 2886291 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2886350
Query 65301 CTATTTCTAAGACCGTA 65317
|| ||||| | ||| ||
Sbjct 2886351 CTGTTTCTTACACCATA 2886367
Score = 102 bits (112), Expect = 1e-16
Identities = 122/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
|||| || | ||| |||||||||||||| | ||| || || || || || || || | |
Sbjct 2907862 CACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGACACAGCAATCCTTGCTGCCAGGA 2907921
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
|||||||||| || || | ||||| | || || ||| |||| || |||| ||| || |
Sbjct 2907922 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 2907981
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 2907982 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2908027
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478
|||| || || ||||| || | || || | | ||||| || || || || || || |
Sbjct 2890558 CATAGGTTTCATATGGACCATACTCCTTGGACAAGTCACAGCTGGCTTCCAAGGCTCCAT 2890617
Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538
||||||||||||| ||||| | |||||| || || || || | || ||||| ||||
Sbjct 2890618 AATAAATGGTTTCAAAGATTTGCTTATTCAGCAACTGGGCCTCTGGACTCTCAAAAGGAT 2890677
Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598
| | | |||||||| || ||||| | ||||| || ||||| || || || | ||| |
Sbjct 2890678 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 2890737
Query 65599 TCTTATTAGA 65608
||||| ||
Sbjct 2890738 GTTTATTTGA 2890747
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||||||||| |||||||| ||||||||||| || | || | || |||| |
Sbjct 2895432 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 2895491
Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175
|| || || |||||||| ||||| || | ||| |||||| | | || || |||||||
Sbjct 2895492 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCCAAATGCCA 2895551
Query 66176 CGGTTCCAAGTATATGGC 66193
|| |||| ||| || ||
Sbjct 2895552 AGGCTCCAGGTAAATAGC 2895569
>seq60
Length=14545593
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| || || | || |||||||||||||| |||||||| || || || || |
Sbjct 8429094 CCTCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCT 8429035
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| ||||| || ||||| || ||||||||||| |||||||| ||||| |||||||
Sbjct 8429034 TGAGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 8428975
Query 36300 CAATAAGTCTCTCTCC 36315
| | || || ||||||
Sbjct 8428974 CTACAACTCGCTCTCC 8428959
Score = 100 bits (110), Expect = 4e-16
Identities = 94/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477
|||||||| || || ||||| | |||||||||||||| || || |||||||| |||||
Sbjct 8427081 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGC 8427022
Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537
||||| || || |||||||| | ||||| |||| ||| |||||| | ||| |||||
Sbjct 8427021 AATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTAAAACGTTC 8426962
>seq6
Length=61284144
Score = 113 bits (124), Expect = 6e-20
Identities = 500/778 (64%), Gaps = 24/778 (3%)
Strand=Plus/Minus
Query 35958 AAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTT 36017
||| ||| |||| || | ||| | || ||||| ||||| |||||||| || | |||
Sbjct 57314837 AAACTTTGCTAAAACCAAGTTCTGGCATAAATCTGTCTGCTACAAATTCCATGT---TTT 57314781
Query 36018 TCATCATTTCA---CAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATT 36074
| ||||| | ||||||||||| |||| | | |||| || | || || || |
Sbjct 57314780 GCCTCATTAAAATGCAATTCATTCCAATAAACCACAAGGCAAGA-CCTCGGTTAGGAACT 57314722
Query 36075 CTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGAT 36134
||||||| || | | | | || || | ||||| ||| || ||| |
Sbjct 57314721 CTTGTTCTATCTTAATAACACCGATAATTATTTCTTTTACTTTTTACTCTGAAGGTTTGT 57314662
Query 36135 ACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAA 36194
|||| || | |||||| || | || || || || ||||||| ||| || |||| | |
Sbjct 57314661 ACAAGAAGTATTTAAATATTAGGCAGGCAAAGTCACAGTGTAAACC-TCA-CTCTGCCTA 57314604
Query 36195 TTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 36254
|||||| |||||||| |||| ||| || || | || || || | |||
Sbjct 57314603 GTAATTCATTGGAAAATGTGATCGTAGGCCTTGATCCTCATTTCTTGAGGTAGAATGCTA 57314544
Query 36255 ACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTC 36314
||||| | |||| ||| ||||| | |||||| ||||||| | | ||||
Sbjct 57314543 GTGCAAAAGCGCCAGTGGAGAT--TTCCTCC-ACTGCCCCAAAGGCTACCACCTGTTCTC 57314487
Query 36315 CATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 36374
||||| || || ||| ||| | || || ||||||||| ||||| |
Sbjct 57314486 CATAAATAGCT---TCTTGTCCCCAACCAGGT--CCTGTCAGCCTTCTTT---ACACAGG 57314435
Query 36375 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 36434
|||| || || |||||| |||||| || | || || | |||||||| | || |
Sbjct 57314434 GCATAGTTTCAATAGCACGGAAGAGAAAGGCCTCCTCTTTGCCATCTTTAA--TGCGTGT 57314377
Query 36435 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 36494
|||| | ||||| || ||||| ||||| | ||| || || | ||||| || |||
Sbjct 57314376 CAATAAGGAGACTCTATATTTCAGAATGCAAGTTGTCTGTGTCACCTTGAAG-CCACAGA 57314318
Query 36495 AACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCA 36554
||| | | || || ||||||||||||| || || ||||| | | ||||||
Sbjct 57314317 AACGTGTTGCTTCTGTAATCTGTACTTTTGGACTAAATCACTGCACCGGGGTTTCATATC 57314258
Query 36555 CTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTG 36614
| ||| ||||| |||||| || ||| | ||| |||||||| | | || |
Sbjct 57314257 CAGCTCCATCACTTACTGCAATGAAAGCCCGAGCCTGTGATATAAAATCTCTCTCCACAG 57314198
Query 36615 GTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAA 36674
| | || ||||| | | | || || || | ||| || || ||||||||| ||
Sbjct 57314197 GCTTCAG-GGCTTCCAGTGCTGAAAGTCCTTGGAGAGATCTACCTCCTCCACTGTCTCAA 57314139
Query 36675 ATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732
| || ||||| || || | ||||| | ||| ||| |||| |||| | ||||||||
Sbjct 57314138 AGGAAGCCTCAGCTTTCTGGTACATCTGCCAAATGCCATGGTATTTGACAGGAAAAAT 57314081
>seq35
Length=24201928
Score = 102 bits (112), Expect = 1e-16
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241
|| ||||| || || | ||| || ||||| |||||||| ||||| || || | || ||
Sbjct 13540743 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 13540802
Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300
||||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||||||
Sbjct 13540803 AGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 13540861
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601
|||||||||||||| ||||| ||||||||||||||||| || || || || ||||||
Sbjct 13547396 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGATAAAA 13547455
Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 36650
|| || || | || ||| || || ||||| | | || ||| || ||||
Sbjct 13547456 TACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 13547504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658147402757080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |