Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq5 150 2e-31
seq8 95.1 1e-14
seq17 82.4 7e-11
>seq5
Length=63188916
Score = 150 bits (166), Expect = 2e-31
Identities = 131/163 (80%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
|||||||||||| ||| ||||||| || || || |||||||||||||| ||||| || |
Sbjct 52112093 TCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGG 52112152
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 52112153 GCACACCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 52112212
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151
||||||| ||||| || | | || || ||||| ||||||||
Sbjct 52112213 CCACGTAGAACTGGCAAAGCGCATGGCACGGAGGTAGAGCCAT 52112255
>seq8
Length=46046909
Score = 95.1 bits (104), Expect = 1e-14
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCC 20983
||| || |||||||| || ||||| || || || ||||| || || |||||||| ||
Sbjct 12968541 CAGTGGGTCAACGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACAAAGTCACC 12968600
Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043
|| ||||||| |||| ||| ||||||| || || || |||||||||||||| |||||
Sbjct 12968601 TGGCTTCAGGCCGGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTT 12968660
>seq17
Length=33267342
Score = 82.4 bits (90), Expect = 7e-11
Identities = 130/184 (71%), Gaps = 2/184 (1%)
Strand=Plus/Minus
Query 2984 CTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAA-TTCTCTGCTCAAAATAATATT 3042
|| || ||||| || ||| || || ||||| | ||| ||||||||| | || ||||
Sbjct 16275670 CTTGCAAGAAAATGAGCTTTTTGTGGAGGTTC-CTTAAGTTCTCTGCTGAGAACTTTATT 16275612
Query 3043 AATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCAT 3102
|||||||| | | ||| | ||||| ||||| ||||| ||| | || | | |||||
Sbjct 16275611 AATTCTGTCCTTTAAAGGTTGATTCTTCTCAGGAATGGAGAACTAGGTCTTCCTACCCAT 16275552
Query 3103 AATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAAAATACAT 3162
||| |||| ||||| || |||| | || || | || | ||||| | || |||||| |
Sbjct 16275551 AATCACCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTCATCCTTTGGAAATACTT 16275492
Query 3163 CATT 3166
|||
Sbjct 16275491 AATT 16275488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427759905863760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |