Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq5 150 2e-31 seq8 95.1 1e-14 seq17 82.4 7e-11 >seq5 Length=63188916 Score = 150 bits (166), Expect = 2e-31 Identities = 131/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| ||||||| || || || |||||||||||||| ||||| || | Sbjct 52112093 TCAGGCCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGG 52112152 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | ||||||||||||||||||||||||||||| || Sbjct 52112153 GCACACCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 52112212 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCAT 21151 ||||||| ||||| || | | || || ||||| |||||||| Sbjct 52112213 CCACGTAGAACTGGCAAAGCGCATGGCACGGAGGTAGAGCCAT 52112255 >seq8 Length=46046909 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCC 20983 ||| || |||||||| || ||||| || || || ||||| || || |||||||| || Sbjct 12968541 CAGTGGGTCAACGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGTACAAAGTCACC 12968600 Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043 || ||||||| |||| ||| ||||||| || || || |||||||||||||| ||||| Sbjct 12968601 TGGCTTCAGGCCGGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTT 12968660 >seq17 Length=33267342 Score = 82.4 bits (90), Expect = 7e-11 Identities = 130/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 2984 CTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAA-TTCTCTGCTCAAAATAATATT 3042 || || ||||| || ||| || || ||||| | ||| ||||||||| | || |||| Sbjct 16275670 CTTGCAAGAAAATGAGCTTTTTGTGGAGGTTC-CTTAAGTTCTCTGCTGAGAACTTTATT 16275612 Query 3043 AATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCAT 3102 |||||||| | | ||| | ||||| ||||| ||||| ||| | || | | ||||| Sbjct 16275611 AATTCTGTCCTTTAAAGGTTGATTCTTCTCAGGAATGGAGAACTAGGTCTTCCTACCCAT 16275552 Query 3103 AATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAAAATACAT 3162 ||| |||| ||||| || |||| | || || | || | ||||| | || |||||| | Sbjct 16275551 AATCACCAGATTCTGTTTACCTTCTACTGAAGAGGTTGTGGTCATCCTTTGGAAATACTT 16275492 Query 3163 CATT 3166 ||| Sbjct 16275491 AATT 16275488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427759905863760