Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq60 105 6e-18 seq82 84.2 2e-11 >seq60 Length=14545593 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| || || || || || ||||| || | || ||||||| ||||||||| | Sbjct 8429094 CCTCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCT 8429035 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| || ||||||||||| | Sbjct 8429034 TGAGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 8428975 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||| ||||| Sbjct 8428974 CTACAACTCGCTCTCC 8428959 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || ||| | | || || || ||||| | Sbjct 8430736 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGG-GCTCGACATCACTCCCATCCT 8430678 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 8430677 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 8430618 Query 13431 CATAAAATCGAATGGATTT 13449 |||||| || ||||||||| Sbjct 8430617 CATAAAGTCAAATGGATTT 8430599 >seq82 Length=9772303 Score = 84.2 bits (92), Expect = 2e-11 Identities = 180/269 (67%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 11165 TTCAAAAATAATTTGTGCCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACTATT 11224 |||| |||| | |||| | |||| ||| |||| | |||||| | | ||| ||| Sbjct 7100349 TTCACAAATGAGCCGTGCAATTCGACTGCCCTTTTTGACTTTAAATTTTTCTTTGCTAAA 7100290 Query 11225 ATTAATAAATATAACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTAT 11284 ||||| | |||||| |||| || || ||||||||||||||||| || || |||||| Sbjct 7100289 ATTAAACAGTATAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTAC 7100230 Query 11285 ATCTATGCCATAATATAACGAAAGACCAGACCTTGGCGCTATTCGTCCATAACAtttttt 11344 ||||||| | | | | | ||||| ||| ||||||| ||||||| | | Sbjct 7100229 ATCTATGAAGTGTTTTGCAGCCAAGCCAGAATGTGGAGCTATTCTTCCATAAAACTCAGA 7100170 Query 11345 tGGAATAGATAAACTTATATCAGTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATA 11404 ||||||| || || || ||||| || | | | || | | | || |||| Sbjct 7100169 AGGAATAGCTATCTGAATGTCGGTTTTCACAAGGGCTGTCTCCATAGGTGGTACTGTATA 7100110 Query 11405 ATCATAAGCACTATATAAATCATATCCTG 11433 |||||| ||||| || | ||||| |||| Sbjct 7100109 ATCATACGCACTGTACAGGTCATAGCCTG 7100081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478570332454680