Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq60 105 6e-18
seq82 84.2 2e-11
>seq60
Length=14545593
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||| || || || || || ||||| || | || ||||||| ||||||||| |
Sbjct 8429094 CCTCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCT 8429035
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||| | || || || || |||||||| ||||| || ||||||||||| |
Sbjct 8429034 TGAGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 8428975
Query 13802 CTATTAGTCGTTCTCC 13817
||| | ||| |||||
Sbjct 8428974 CTACAACTCGCTCTCC 8428959
Score = 91.5 bits (100), Expect = 1e-13
Identities = 105/139 (76%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATC-GTCTTTGTTAGAAATAACGCCCATTTT 13370
|| || ||| |||| || | |||| ||| || ||| | | || || || ||||| |
Sbjct 8430736 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGG-GCTCGACATCACTCCCATCCT 8430678
Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430
||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| ||
Sbjct 8430677 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTCTC 8430618
Query 13431 CATAAAATCGAATGGATTT 13449
|||||| || |||||||||
Sbjct 8430617 CATAAAGTCAAATGGATTT 8430599
>seq82
Length=9772303
Score = 84.2 bits (92), Expect = 2e-11
Identities = 180/269 (67%), Gaps = 0/269 (0%)
Strand=Plus/Minus
Query 11165 TTCAAAAATAATTTGTGCCACTCGATCGCCTCTTTTAATATTAAATGTATTTTTACTATT 11224
|||| |||| | |||| | |||| ||| |||| | |||||| | | ||| |||
Sbjct 7100349 TTCACAAATGAGCCGTGCAATTCGACTGCCCTTTTTGACTTTAAATTTTTCTTTGCTAAA 7100290
Query 11225 ATTAATAAATATAACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTAT 11284
||||| | |||||| |||| || || ||||||||||||||||| || || ||||||
Sbjct 7100289 ATTAAACAGTATAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTAC 7100230
Query 11285 ATCTATGCCATAATATAACGAAAGACCAGACCTTGGCGCTATTCGTCCATAACAtttttt 11344
||||||| | | | | | ||||| ||| ||||||| ||||||| | |
Sbjct 7100229 ATCTATGAAGTGTTTTGCAGCCAAGCCAGAATGTGGAGCTATTCTTCCATAAAACTCAGA 7100170
Query 11345 tGGAATAGATAAACTTATATCAGTTTTAACTAAAATTCTTTCTTTTGATTTAACGATATA 11404
||||||| || || || ||||| || | | | || | | | || ||||
Sbjct 7100169 AGGAATAGCTATCTGAATGTCGGTTTTCACAAGGGCTGTCTCCATAGGTGGTACTGTATA 7100110
Query 11405 ATCATAAGCACTATATAAATCATATCCTG 11433
|||||| ||||| || | ||||| ||||
Sbjct 7100109 ATCATACGCACTGTACAGGTCATAGCCTG 7100081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478570332454680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |