Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq48 141 1e-28 seq60 138 2e-27 seq35 107 3e-18 >seq48 Length=18573065 Score = 141 bits (156), Expect = 1e-28 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| ||||||||||| || |||||||| ||||| | Sbjct 2886231 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATG 2886290 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 |||||||||||||||||||| ||||||||||| ||||| ||||| || || | | || | Sbjct 2886291 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2886350 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 2886351 CTGTTTCTTACACCAT 2886366 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| |||||||| ||||| | ||| || || || || || || || || | Sbjct 2907862 CACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGACACAGCAATCCTTGCTGCCAGGA 2907921 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 |||||||||| || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 2907922 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 2907981 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 2907982 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2908027 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| ||||||||||| || | || || || |||| | ||| Sbjct 2895436 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACGCTGC 2895495 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| || Sbjct 2895496 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCCAAATGCCAAGGC 2895555 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 2895556 TCCAGGTAAATAGC 2895569 Score = 95.1 bits (104), Expect = 2e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTT-CTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCA 71439 |||| || || ||||| || | || || | | ||| |||| || || || || |||||| Sbjct 2890558 CATAGGTTTCATATGGACCATACTCCTTGGACAAGT-CACAGCTGGCTTCCAAGGCTCCA 2890616 Query 71440 TAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGA 71499 |||||||||||||| || || | |||||| || || || || || || ||||| ||| Sbjct 2890617 TAATAAATGGTTTCAAAGATTTGCTTATTCAGCAACTGGGCCTCTGGACTCTCAAAAGGA 2890676 Query 71500 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGT 71559 || | | |||||||| || ||||| | ||||| || ||||| || || || | || Sbjct 2890677 TACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGG 2890736 Query 71560 CTCTTATTAGA 71570 | ||||| || Sbjct 2890737 CGTTTATTTGA 2890747 Score = 86.0 bits (94), Expect = 8e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||| | ||| | || | || || ||||| || | || ||||| || || |||||| Sbjct 2903293 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAAC 2903352 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTAT 72515 || || ||||| || || ||||| || |||||||| | || ||||| || || || || Sbjct 2903353 CACTTCTCAGAAAGAAGGTTGTATGTTTCAATAGCAGCATCAATATCTTCACTG-TGAAT 2903411 Query 72516 TCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTC 72554 || || | || | ||| ||||||||||| |||||||| Sbjct 2903412 CCCCACAGATACCCTCATCAACATATGCTGTGGTCTTTC 2903450 >seq60 Length=14545593 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | || |||||||||||||| |||||||| || || || || | Sbjct 8429094 CCTCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCT 8429035 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||||||||| ||||| ||||||| Sbjct 8429034 TGAGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 8428975 Query 42207 CAATAAGTCTCTCTCC 42222 | | || || |||||| Sbjct 8428974 CTACAACTCGCTCTCC 8428959 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || || || || | |||||||||||||| || || |||||||| ||||| Sbjct 8427081 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGC 8427022 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || || || || |||||||| | |||||| |||||||| |||||| | ||| ||||| Sbjct 8427021 AATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTAAAACGTTC 8426962 >seq35 Length=24201928 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 |||||||| || || | ||| || ||||| |||||||| ||||| || || | || || Sbjct 13540743 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 13540802 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || |||||||| Sbjct 13540803 AGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 13540861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671113302416120