Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 5e-15 seq48 95.1 2e-14 >seq8 Length=46046909 Score = 96.9 bits (106), Expect = 5e-15 Identities = 190/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 70346 GGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACC 70405 ||||| ||| | |||||||| ||||| | || | || ||||||| || ||||| ||| Sbjct 12968672 GGTGTGCCCCTCAACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACACATCACC 12968613 Query 70406 GGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCAC 70465 |||||||| | || || ||||| || | || || || || | || | |||||| Sbjct 12968612 GGCCTGAAGCCAGGTGACTTTGTACATACTTTGGGAGATGCACATATTTACCTGAATCAC 12968553 Query 70466 ATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTT 70525 | || ||| | || |||| | | || || ||||| ||||| || ||||| | | Sbjct 12968552 GTTGACCCACTGAAAATGCAGTTTCAGCGAGAACCGAGGCCTTTCCCAAAGCTCAAAATC 12968493 Query 70526 GCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTAC 70585 ||| |||||||| || ||||| || ||| |||| ||| | |||| ||| Sbjct 12968492 CTTCGAAAAGTTGAGAAAATTGATGACTTCAAGGCTGAAGTCTTTCAGCTTGAAGGGTAC 12968433 Query 70586 GATCCATACCCTAAGATTCCCATGGTTCTGGCTGTTTAGAG 70626 ||||| |||| | ||| |||| ||||||||||||| Sbjct 12968432 AATCCACACCCGACTATTAAAATGGAAATGGCTGTTTAGAG 12968392 >seq48 Length=18573065 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 || ||| | |||||| | | ||||| |||||| || ||||||||||| |||||||| Sbjct 2894223 CTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGCACTCCGTACATGCTCTACAAA 2894164 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| || ||||| || |||||||| | || |||| || ||||| || ||| ||| Sbjct 2894163 GATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACGATCAAATGCAGCAACCTG 2894104 Query 97299 TGCACGGAAATTGTAGAGTA 97318 ||||| ||||| ||||| || Sbjct 2894103 TGCACAGAAATAGTAGAATA 2894084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741030604378120