Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq8 96.9 5e-15
seq48 95.1 2e-14
>seq8
Length=46046909
Score = 96.9 bits (106), Expect = 5e-15
Identities = 190/281 (68%), Gaps = 0/281 (0%)
Strand=Plus/Minus
Query 70346 GGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACC 70405
||||| ||| | |||||||| ||||| | || | || ||||||| || ||||| |||
Sbjct 12968672 GGTGTGCCCCTCAACATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACACATCACC 12968613
Query 70406 GGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCAC 70465
|||||||| | || || ||||| || | || || || || | || | ||||||
Sbjct 12968612 GGCCTGAAGCCAGGTGACTTTGTACATACTTTGGGAGATGCACATATTTACCTGAATCAC 12968553
Query 70466 ATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTT 70525
| || ||| | || |||| | | || || ||||| ||||| || ||||| | |
Sbjct 12968552 GTTGACCCACTGAAAATGCAGTTTCAGCGAGAACCGAGGCCTTTCCCAAAGCTCAAAATC 12968493
Query 70526 GCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTAC 70585
||| |||||||| || ||||| || ||| |||| ||| | |||| |||
Sbjct 12968492 CTTCGAAAAGTTGAGAAAATTGATGACTTCAAGGCTGAAGTCTTTCAGCTTGAAGGGTAC 12968433
Query 70586 GATCCATACCCTAAGATTCCCATGGTTCTGGCTGTTTAGAG 70626
||||| |||| | ||| |||| |||||||||||||
Sbjct 12968432 AATCCACACCCGACTATTAAAATGGAAATGGCTGTTTAGAG 12968392
>seq48
Length=18573065
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238
|| ||| | |||||| | | ||||| |||||| || ||||||||||| ||||||||
Sbjct 2894223 CTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGCACTCCGTACATGCTCTACAAA 2894164
Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298
||| || ||||| || |||||||| | || |||| || ||||| || ||| |||
Sbjct 2894163 GATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACGATCAAATGCAGCAACCTG 2894104
Query 97299 TGCACGGAAATTGTAGAGTA 97318
||||| ||||| ||||| ||
Sbjct 2894103 TGCACAGAAATAGTAGAATA 2894084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741030604378120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |