Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq35 114 1e-20 seq60 84.2 2e-11 >seq35 Length=24201928 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| ||| | Sbjct 13540741 CTTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 13540800 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| | Sbjct 13540801 TTAGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 13540860 Query 13293 CTATCAACCTTTCACC 13308 | | || |||||| || Sbjct 13540861 CCACCACCCTTTCCCC 13540876 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| || ||||||||||| ||| ||| |||||||| || | Sbjct 13528418 AATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACGATTCATTCCAATGAGG 13528477 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 | || |||| |||||||||||||| Sbjct 13528478 TCAACTGGCAAGGCTTCTGTTAAAAA 13528503 Score = 82.4 bits (90), Expect = 7e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 12874 AACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAA 12933 ||||| ||| ||||| || |||||||| |||||||| ||||| |||||||||||||| || Sbjct 13524269 AACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCCATAAAATCAAA 13524328 Query 12934 AGGATTTT 12941 ||||||| Sbjct 13524329 GGGATTTT 13524336 >seq60 Length=14545593 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| ||||| || || | | ||||||||||| || || || |||||||| || ||||| Sbjct 8427075 AATGTAAGTGTCAATGAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 8427016 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | ||||||| ||||||||||| Sbjct 8427015 GAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTC 8426977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430966185229974