Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq35 114 1e-20
seq60 84.2 2e-11
>seq35
Length=24201928
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || || || || ||||| || || || |||||||| |||| ||| |
Sbjct 13540741 CTTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 13540800
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || ||||| || || |||||||| || || ||||| |
Sbjct 13540801 TTAGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 13540860
Query 13293 CTATCAACCTTTCACC 13308
| | || |||||| ||
Sbjct 13540861 CCACCACCCTTTCCCC 13540876
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039
||||||||||| |||||||| || ||||||||||| ||| ||| |||||||| || |
Sbjct 13528418 AATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACGATTCATTCCAATGAGG 13528477
Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065
| || |||| ||||||||||||||
Sbjct 13528478 TCAACTGGCAAGGCTTCTGTTAAAAA 13528503
Score = 82.4 bits (90), Expect = 7e-11
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 12874 AACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAA 12933
||||| ||| ||||| || |||||||| |||||||| ||||| |||||||||||||| ||
Sbjct 13524269 AACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCCATAAAATCAAA 13524328
Query 12934 AGGATTTT 12941
|||||||
Sbjct 13524329 GGGATTTT 13524336
>seq60
Length=14545593
Score = 84.2 bits (92), Expect = 2e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479
||| ||||| || || | | ||||||||||| || || || |||||||| || |||||
Sbjct 8427075 AATGTAAGTGTCAATGAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGCAATTTG 8427016
Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518
||| ||||| ||||| | ||||||| |||||||||||
Sbjct 8427015 GAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTC 8426977
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430966185229974
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |