Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq25 147 5e-30 seq35 123 6e-23 seq82 113 1e-19 seq115 111 4e-19 seq60 109 1e-18 seq15 109 1e-18 seq30 89.7 1e-12 >seq25 Length=29395486 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104373 TCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTA 104432 |||| | || |||||||| ||||| || |||||||| || || || ||||| || | Sbjct 9574085 TCTGGAGGTTGTAGTCAGAAAGAGTGAGGCCATCTTCTAGCTGCTTGCCTGCAAAGATGA 9574144 Query 104433 GCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTA 104492 ||||||| || |||||||| || |||||||||||||| ||||| || | ||||| || | Sbjct 9574145 GCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTCCACATTCTCCA 9574204 Query 104493 CGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATA 104552 |||||| || ||||| ||||| || || || ||||| || || || || || || || | Sbjct 9574205 TGGTATCACTGGGTTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGA 9574264 Query 104553 TCTGCATTTTG 104563 | ||||||||| Sbjct 9574265 TTTGCATTTTG 9574275 >seq35 Length=24201928 Score = 123 bits (136), Expect = 6e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||| ||||||||||| || ||||| ||||| || ||||| Sbjct 13540876 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCCTTTGCT 13540817 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||||||||| |||||||| ||| | ||||| ||||| ||| | Sbjct 13540816 GCTATATTCTGGCTAAAGAAAAGAGGTCTTATGCCTGGACTCACTTTTTCTAATGAACTC 13540757 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 13540756 ATCAGCAGAGATGAAG 13540741 >seq82 Length=9772303 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 65769 TTAAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAA 65828 ||||| | || || | |||||||| | || | |||||||| |||||||| ||| | Sbjct 7100309 TTAAATTTTTCTTTGCTAAAATTAAACAGTATAACACCAACATTTCCTCTATAATCTTCA 7100250 Query 65829 TCTATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGCT 65888 ||||| |||||||| ||||||||||| |||| || || || ||||| | |||||| Sbjct 7100249 TCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAATGTGGAGCT 7100190 Query 65889 ATTCTACCATAATATCCTCTAGGAACTGATATAATCAAATCAGTAAATACCAATTCTTTG 65948 ||||| |||||| | | ||||| | ||| | || || || | || | Sbjct 7100189 ATTCTTCCATAAAACTCAGAAGGAATAGCTATCTGAATGTCGGTTTTCACAAGGGCTGTC 7100130 Query 65949 TCCATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATATCCTGCAGCCC 66003 ||||| ||| |||| |||||||| ||||| || || || ||||| |||| |||| Sbjct 7100129 TCCATAGGTGGTACTGTATAATCATACGCACTGTACAGGTCATAGCCTGTGGCCC 7100075 >seq115 Length=4025681 Score = 111 bits (122), Expect = 4e-19 Identities = 155/214 (72%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || |||| || ||||| | ||||||| | ||| | || |||| Sbjct 2519646 ACAAGATGAAGAGTGTATTCCTTTTGAATGT---AGTCAGACAAAGTACATCCAGCTTCC 2519702 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||||||| |||||||| || || || || ||||||||||| |||||||| |||||||| Sbjct 2519703 AGTTGTTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 2519762 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT- 104529 |||| || ||||||| |||| ||||| ||||| ||| || || | ||||| Sbjct 2519763 ATCTCAGCCTTTACATATTCTGTTGTATCCAAGGGTTCAACCGTGAGAGTGGTGGTCTTC 2519822 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||| ||| ||||| | || | ||||| ||| Sbjct 2519823 CCCAGAAAG-GTTTTCATGAAAACGTGCATCTTG 2519855 >seq60 Length=14545593 Score = 109 bits (120), Expect = 1e-18 Identities = 155/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | |||||||| || ||||| | ||||| || || || | ||| Sbjct 3695501 ACGAGATGAAGAGTAGATTCCTT-TGAATGCTGTAGTCGGACGAAGCATGTCCATTTTCC 3695559 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||| || |||||||| || || ||||| ||||||||||| |||| | | |||||||| Sbjct 3695560 AGTTTCTTGCCAGCAAATATCAGTCTCTGCTGATCAGGAGGGATTCTTCCCTTATCCTGG 3695619 Query 104471 ATCTTTG-CTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 | ||||| | |||||||||| || ||||| ||| ||||| || | || ||||| Sbjct 3695620 A-CTTTGCCCTTTACATTTTTTATTGTATCTGATTTTTCAACCTCAAGAATGATGGTCTT 3695678 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || |||| ||||||||||| |||| ||| || Sbjct 3695679 TCC-CTAAGGGTTTTTACAAAAATCTTCATCTT 3695710 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| ||||| Sbjct 8430594 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 8430653 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTC 269592 |||||| | ||| | | ||||||| ||||| || ||||| Sbjct 8430654 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTC 8430694 >seq15 Length=34426505 Score = 109 bits (120), Expect = 1e-18 Identities = 189/275 (69%), Gaps = 10/275 (4%) Strand=Plus/Minus Query 65626 ATTTTCATTTTACTCCAGTAGAACCAAAACCACAGGACCCTCTTTCTGTTATATCTATAG 65685 ||||| ||||| ||||||||||||||| || | || || ||||| || ||||| | | Sbjct 33280765 ATTTTAATTTTT-TCCAGTAGAACCAAATCCTCCTGAACCCCTTTCAGTGATATCCAAAA 33280707 Query 65686 CATCTACAGAAAGAGCCTCCCTTATTTCTGGTTGTGCTATTTTTTCAAATATGATTTGAG 65745 | | || | ||| ||||||||| | || |||| | |||| || | Sbjct 33280706 CTT---------GATCTTCCTCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGTG 33280656 Query 65746 CTACTCTATCGCCTTTACATATATTAAACTCCTCCTTACCGAAATTAAATATTAATATTC 65805 | | || ||| || || | | ||||| || || ||||||||||| | || | | Sbjct 33280655 CAATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCGAAATTAAACAGTACAACAC 33280596 Query 65806 CAACATTACCTCTATAGTCTGAATCTATAACACCAGCACCTACATCTATAAAGTAATTAT 65865 ||||||| ||||| || ||| |||| | |||||||| ||||||||||| |||| || Sbjct 33280595 CAACATTTCCTCTGTAATCTTCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTG 33280536 Query 65866 ACGCTAATCCAGATCGGGGAGCTATTCTACCATAA 65900 || || ||||| || || |||| ||| |||||| Sbjct 33280535 CAGCCAAGCCAGAACGTGGGGCTACTCTTCCATAA 33280501 >seq30 Length=26277727 Score = 89.7 bits (98), Expect = 1e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||||||||| || || || ||||| || || | || ||||| || ||||| ||| Sbjct 20335832 GTAGATTCTTTCTGGATGTTGTAATCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCA 20335891 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 || || || | |||||| || ||||| || || || || || ||||| ||||| || || Sbjct 20335892 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 20335950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151352859674596