Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq25 147 5e-30
seq35 123 6e-23
seq82 113 1e-19
seq115 111 4e-19
seq60 109 1e-18
seq15 109 1e-18
seq30 89.7 1e-12
>seq25
Length=29395486
Score = 147 bits (162), Expect = 5e-30
Identities = 147/191 (77%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 104373 TCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTA 104432
|||| | || |||||||| ||||| || |||||||| || || || ||||| || |
Sbjct 9574085 TCTGGAGGTTGTAGTCAGAAAGAGTGAGGCCATCTTCTAGCTGCTTGCCTGCAAAGATGA 9574144
Query 104433 GCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTA 104492
||||||| || |||||||| || |||||||||||||| ||||| || | ||||| || |
Sbjct 9574145 GCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTCCACATTCTCCA 9574204
Query 104493 CGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATA 104552
|||||| || ||||| ||||| || || || ||||| || || || || || || || |
Sbjct 9574205 TGGTATCACTGGGTTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGA 9574264
Query 104553 TCTGCATTTTG 104563
| |||||||||
Sbjct 9574265 TTTGCATTTTG 9574275
>seq35
Length=24201928
Score = 123 bits (136), Expect = 6e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|| |||||| | || || ||||| ||||||||||| || ||||| ||||| || |||||
Sbjct 13540876 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCCTTTGCT 13540817
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
||||| || ||| | ||||||||||| |||||||| ||| | ||||| ||||| ||| |
Sbjct 13540816 GCTATATTCTGGCTAAAGAAAAGAGGTCTTATGCCTGGACTCACTTTTTCTAATGAACTC 13540757
Query 269246 ATAAGCAGGGACGAAG 269261
|| ||||| || ||||
Sbjct 13540756 ATCAGCAGAGATGAAG 13540741
>seq82
Length=9772303
Score = 113 bits (124), Expect = 1e-19
Identities = 166/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 65769 TTAAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAA 65828
||||| | || || | |||||||| | || | |||||||| |||||||| ||| |
Sbjct 7100309 TTAAATTTTTCTTTGCTAAAATTAAACAGTATAACACCAACATTTCCTCTATAATCTTCA 7100250
Query 65829 TCTATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAATCCAGATCGGGGAGCT 65888
||||| |||||||| ||||||||||| |||| || || || ||||| | ||||||
Sbjct 7100249 TCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCAGCCAAGCCAGAATGTGGAGCT 7100190
Query 65889 ATTCTACCATAATATCCTCTAGGAACTGATATAATCAAATCAGTAAATACCAATTCTTTG 65948
||||| |||||| | | ||||| | ||| | || || || | || |
Sbjct 7100189 ATTCTTCCATAAAACTCAGAAGGAATAGCTATCTGAATGTCGGTTTTCACAAGGGCTGTC 7100130
Query 65949 TCCATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATATCCTGCAGCCC 66003
||||| ||| |||| |||||||| ||||| || || || ||||| |||| ||||
Sbjct 7100129 TCCATAGGTGGTACTGTATAATCATACGCACTGTACAGGTCATAGCCTGTGGCCC 7100075
>seq115
Length=4025681
Score = 111 bits (122), Expect = 4e-19
Identities = 155/214 (72%), Gaps = 5/214 (2%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || |||| || ||||| | ||||||| | ||| | || ||||
Sbjct 2519646 ACAAGATGAAGAGTGTATTCCTTTTGAATGT---AGTCAGACAAAGTACATCCAGCTTCC 2519702
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|||||||| |||||||| || || || || ||||||||||| |||||||| ||||||||
Sbjct 2519703 AGTTGTTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 2519762
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT- 104529
|||| || ||||||| |||| ||||| ||||| ||| || || | |||||
Sbjct 2519763 ATCTCAGCCTTTACATATTCTGTTGTATCCAAGGGTTCAACCGTGAGAGTGGTGGTCTTC 2519822
Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|||| ||| ||||| | || | ||||| |||
Sbjct 2519823 CCCAGAAAG-GTTTTCATGAAAACGTGCATCTTG 2519855
>seq60
Length=14545593
Score = 109 bits (120), Expect = 1e-18
Identities = 155/213 (73%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | |||||||| || ||||| | ||||| || || || | |||
Sbjct 3695501 ACGAGATGAAGAGTAGATTCCTT-TGAATGCTGTAGTCGGACGAAGCATGTCCATTTTCC 3695559
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|||| || |||||||| || || ||||| ||||||||||| |||| | | ||||||||
Sbjct 3695560 AGTTTCTTGCCAGCAAATATCAGTCTCTGCTGATCAGGAGGGATTCTTCCCTTATCCTGG 3695619
Query 104471 ATCTTTG-CTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529
| ||||| | |||||||||| || ||||| ||| ||||| || | || |||||
Sbjct 3695620 A-CTTTGCCCTTTACATTTTTTATTGTATCTGATTTTTCAACCTCAAGAATGATGGTCTT 3695678
Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|| |||| ||||||||||| |||| ||| ||
Sbjct 3695679 TCC-CTAAGGGTTTTTACAAAAATCTTCATCTT 3695710
Score = 84.2 bits (92), Expect = 5e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551
|| |||||||| ||| |||||||||||||| ||| | ||||| ||| |||| |||||
Sbjct 8430594 GTAGAAAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGGAAGACTAACTTCTTT 8430653
Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTC 269592
|||||| | ||| | | ||||||| ||||| || |||||
Sbjct 8430654 GAGAAGAGAGTAGGCGAGTATCAGAGGATGGGAGTGATGTC 8430694
>seq15
Length=34426505
Score = 109 bits (120), Expect = 1e-18
Identities = 189/275 (69%), Gaps = 10/275 (4%)
Strand=Plus/Minus
Query 65626 ATTTTCATTTTACTCCAGTAGAACCAAAACCACAGGACCCTCTTTCTGTTATATCTATAG 65685
||||| ||||| ||||||||||||||| || | || || ||||| || ||||| | |
Sbjct 33280765 ATTTTAATTTTT-TCCAGTAGAACCAAATCCTCCTGAACCCCTTTCAGTGATATCCAAAA 33280707
Query 65686 CATCTACAGAAAGAGCCTCCCTTATTTCTGGTTGTGCTATTTTTTCAAATATGATTTGAG 65745
| | || | ||| ||||||||| | || |||| | |||| || |
Sbjct 33280706 CTT---------GATCTTCCTCTATTTCTGGATAAAAAATCCATTCACAAATGAGCTGTG 33280656
Query 65746 CTACTCTATCGCCTTTACATATATTAAACTCCTCCTTACCGAAATTAAATATTAATATTC 65805
| | || ||| || || | | ||||| || || ||||||||||| | || | |
Sbjct 33280655 CAATTCGATCACCCTTTTTGACTTCAAACTTTTCTTTGCCGAAATTAAACAGTACAACAC 33280596
Query 65806 CAACATTACCTCTATAGTCTGAATCTATAACACCAGCACCTACATCTATAAAGTAATTAT 65865
||||||| ||||| || ||| |||| | |||||||| ||||||||||| |||| ||
Sbjct 33280595 CAACATTTCCTCTGTAATCTTCATCTGTGACACCAGCTCCTACATCTATGAAGTGTTTTG 33280536
Query 65866 ACGCTAATCCAGATCGGGGAGCTATTCTACCATAA 65900
|| || ||||| || || |||| ||| ||||||
Sbjct 33280535 CAGCCAAGCCAGAACGTGGGGCTACTCTTCCATAA 33280501
>seq30
Length=26277727
Score = 89.7 bits (98), Expect = 1e-12
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|||||||||||||| || || || ||||| || || | || ||||| || ||||| |||
Sbjct 20335832 GTAGATTCTTTCTGGATGTTGTAATCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCA 20335891
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481
|| || || | |||||| || ||||| || || || || || ||||| ||||| || ||
Sbjct 20335892 GCGAAGATCAACCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 20335950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151352859674596
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |