Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq15 143 3e-29
>seq15
Length=34426505
Score = 143 bits (158), Expect = 3e-29
Identities = 115/139 (83%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| |||||||| || || ||| |||| || ||||||||||||||||||||||| || |
Sbjct 31359036 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 31359095
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
|||| |||||||| || || | ||| || ||| |||||||||||||||||||| || |
Sbjct 31359096 TGCCCCAGGCTGAGAACCACGGCCCAGACATCAAGGAGCACGTGAACTCTCTGGGGGAAA 31359155
Query 10260 ATCTAAAGACCCTAAGGCT 10278
| || |||||||| |||||
Sbjct 31359156 AGCTGAAGACCCTGAGGCT 31359174
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
|||| || | ||||| |||||||||||||||||||| |||||||| || || ||||| |
Sbjct 31361375 AGCTCCAAGGGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 31361434
Query 10419 TAGAAGCATACATGACCATGAAAAT 10443
||||||| || ||||| ||||| ||
Sbjct 31361435 TAGAAGCCTATATGACGATGAAGAT 31361459
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547358078005120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |