Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq15 143 3e-29 >seq15 Length=34426505 Score = 143 bits (158), Expect = 3e-29 Identities = 115/139 (83%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| || ||||||||||||||||||||||| || | Sbjct 31359036 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGGAGGAGGTGA 31359095 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| |||||||| || || | ||| || ||| |||||||||||||||||||| || | Sbjct 31359096 TGCCCCAGGCTGAGAACCACGGCCCAGACATCAAGGAGCACGTGAACTCTCTGGGGGAAA 31359155 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || |||||||| ||||| Sbjct 31359156 AGCTGAAGACCCTGAGGCT 31359174 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || | ||||| |||||||||||||||||||| |||||||| || || ||||| | Sbjct 31361375 AGCTCCAAGGGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 31361434 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||| || ||||| ||||| || Sbjct 31361435 TAGAAGCCTATATGACGATGAAGAT 31361459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547358078005120