Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq15 156 6e-33
seq11 129 8e-25
>seq15
Length=34426505
Score = 156 bits (172), Expect = 6e-33
Identities = 172/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| | || ||| ||| |||||||| || |||| || |||||||| |||
Sbjct 13020442 GTCTGGAACAACCGCTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCGCATACT 13020383
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||| ||||||| ||||| || || || |||||||| || ||||||||||| |||||
Sbjct 13020382 CTGTTATGTTCCCGAAGCCAAATCGTGGCATACATCATCAGGCCAGGCACCAGACCAAAG 13020323
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
| || || || ||||| | |||| | ||| || || | ||||| |||||||| | |
Sbjct 13020322 ACTTCCTGCCCCACAGCAAACCGCAGGTGTTCAGGGACATGAGGAGGGTAGATCATCTCC 13020263
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
||||| ||||||||| | ||| ||||||| || || | ||| ||||
Sbjct 13020262 ACCTGAGTATCTTTGACTGTGGGCGGATACACCTCTCCATTAATTATCT 13020214
Score = 116 bits (128), Expect = 5e-21
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| || || ||||| ||||| || || |||||| ||| ||| | ||
Sbjct 13019327 TCTTACCCCATGACCTAGGCCTTTGGTGAAAGCTGGTCCTCGCTTAGGATCTGTCTTGAA 13019268
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
||||| || ||||| || ||| |||| || |||||||| | ||| ||||||||||| ||
Sbjct 13019267 GAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGGTC 13019208
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207
|| |||| | || | || ||| ||||||||||| | | || ||| || || |
Sbjct 13019207 AGGGATGAACTTTCTTCTTAGGAGAAATTTTTCCACAATCTCTTTCGAATCAGGAAGCTC 13019148
Query 10208 ttttttACCTGGTGAACGAGAA 10229
||| || |||| || |||||
Sbjct 13019147 TTTGTTCCCTGAAAAATGAGAA 13019126
Score = 87.8 bits (96), Expect = 3e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || | |||||||| || ||| || || ||||| ||| || | |
Sbjct 13018733 TCACCTTTCACACCCATGGGAGTTGGGCAGCCGTCAGCCACAGGAGGAAGAGCTCTGGTG 13018674
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
||||||||||| || || || |||||||||||| || | |||| | |||| || |
Sbjct 13018673 TAATAGGAGAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGCACGTTATAAGTT 13018614
Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| ||||| ||||||| || |||| |||||
Sbjct 13018613 GGCGGGCTCTCAATCAGATGTGATCGGGCTGAA 13018581
>seq11
Length=39176111
Score = 129 bits (142), Expect = 8e-25
Identities = 170/236 (72%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
||||||| || || |||| || || || || ||||| || |||||||| |||| |
Sbjct 24311670 TCTTGACAATGTTGAAGCCCATCTCGCCACCAAATGTGCTCGGCTTCCAGTACTCCGGAG 24311611
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
| |||||| ||| | | |||||||||||||||||| |||||||| | || | || |
Sbjct 24311610 AACAGATGGGATTCCCTAGGAGGCCTTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 24311551
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
|||| || ||||||| ||| ||| || ||| || | | | || | ||| |||||||
Sbjct 24311550 TCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAAGAAGCAGCCCCGGGTAGAACTCCA 24311491
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
|| ||||||||||| || || || | || ||||| || ||||| ||||||
Sbjct 24311490 AGGCATCGATGTCTCCATATAGCTCCTCCAACTCAGCAGCCATCTCCTTCTCTCCT 24311435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708497459799280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |