Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq35 89.7 5e-13
seq75 87.8 2e-12
seq60 84.2 2e-11
>seq35
Length=24201928
Score = 89.7 bits (98), Expect = 5e-13
Identities = 94/124 (76%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557
||||||| || || || | |||||||||||| || | || ||||| | ||||| || |
Sbjct 13540741 CTTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 13540800
Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617
||| ||| ||||| | ||||| | ||| || |||||||| || || || |||||||| |
Sbjct 13540801 TTAGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 13540860
Query 21618 CAAC 21621
| ||
Sbjct 13540861 CCAC 13540864
>seq75
Length=11235442
Score = 87.8 bits (96), Expect = 2e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 130666 TTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAAT 130725
|||||| | | ||||| ||| | ||||| | ||| || || | || ||||||||||
Sbjct 995767 TTTCAAACTGAGCAAGACAAGCTTCTAATGAGGCACAGAAAGTCTGGCTGAATGTCCAAT 995826
Query 130726 TTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGGC 130785
| ||| ||||||||||| ||||| |||||| |||||| ||||||||| |||||||
Sbjct 995827 TCCTTGTCTCTTCAGAAAAATAAAAACATTTACTTCCAAACCCAATCCATTGTTTTGGGC 995886
Query 130786 A 130786
|
Sbjct 995887 A 995887
>seq60
Length=14545593
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|| ||||| || |||||||| || | ||| ||| ||| | ||||| | ||||
Sbjct 8430742 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGGGCTCGACATCACTCCC 8430683
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | ||||| || | ||||| || || || || || ||||| ||||||| ||| |||
Sbjct 8430682 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATA 8430623
Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267
|||||||| ||||||||||||||
Sbjct 8430622 TTCTCCATAAAGTCAAATGGATTTTC 8430597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531880275277880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |