Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq35 89.7 5e-13 seq75 87.8 2e-12 seq60 84.2 2e-11 >seq35 Length=24201928 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 ||||||| || || || | |||||||||||| || | || ||||| | ||||| || | Sbjct 13540741 CTTCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 13540800 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 ||| ||| ||||| | ||||| | ||| || |||||||| || || || |||||||| | Sbjct 13540801 TTAGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 13540860 Query 21618 CAAC 21621 | || Sbjct 13540861 CCAC 13540864 >seq75 Length=11235442 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 130666 TTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTGCCAAATGTCCAAT 130725 |||||| | | ||||| ||| | ||||| | ||| || || | || |||||||||| Sbjct 995767 TTTCAAACTGAGCAAGACAAGCTTCTAATGAGGCACAGAAAGTCTGGCTGAATGTCCAAT 995826 Query 130726 TTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCATCCCTTTGGGC 130785 | ||| ||||||||||| ||||| |||||| |||||| ||||||||| ||||||| Sbjct 995827 TCCTTGTCTCTTCAGAAAAATAAAAACATTTACTTCCAAACCCAATCCATTGTTTTGGGC 995886 Query 130786 A 130786 | Sbjct 995887 A 995887 >seq60 Length=14545593 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||| | |||| Sbjct 8430742 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTCGGGCTCGACATCACTCCC 8430683 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||| ||||||| ||| ||| Sbjct 8430682 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATA 8430623 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||||||||| Sbjct 8430622 TTCTCCATAAAGTCAAATGGATTTTC 8430597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531880275277880