Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq48 143 3e-29 seq60 138 1e-27 seq6 111 2e-19 seq35 107 2e-18 >seq48 Length=18573065 Score = 143 bits (158), Expect = 3e-29 Identities = 114/137 (83%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||||||||| || |||||||| ||||| | Sbjct 2886231 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATG 2886290 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 |||||||||||||||||||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 2886291 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2886350 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 2886351 CTGTTTCTTACACCATA 2886367 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| ||||||||||| || | || || || |||| | Sbjct 2895432 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 2895491 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 2895492 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCCAAATGCCA 2895551 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| || || Sbjct 2895552 AGGCTCCAGGTAAATAGC 2895569 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| |||||||| ||||| | ||| || || || || || || || || | Sbjct 2907862 CACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGACACAGCAATCCTTGCTGCCAGGA 2907921 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 |||||||||| || || | ||||| | || || ||| |||| || |||| ||| || | Sbjct 2907922 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 2907981 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||| || || || || ||| | |||| ||||| || || ||||| Sbjct 2907982 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2908027 Score = 86.0 bits (94), Expect = 8e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 |||| || || ||||| || | || || | | ||||| || || || || || || | Sbjct 2890558 CATAGGTTTCATATGGACCATACTCCTTGGACAAGTCACAGCTGGCTTCCAAGGCTCCAT 2890617 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694 ||||||||||||| ||||| | |||||| || || || || | || ||||| |||| Sbjct 2890618 AATAAATGGTTTCAAAGATTTGCTTATTCAGCAACTGGGCCTCTGGACTCTCAAAAGGAT 2890677 Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 | | | |||||||| || || || | ||||| || ||||| || || || | ||| | Sbjct 2890678 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 2890737 Query 62755 TCTTATTAGA 62764 ||||| || Sbjct 2890738 GTTTATTTGA 2890747 >seq60 Length=14545593 Score = 138 bits (152), Expect = 1e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || || || |||||||||||||| |||||||| || || || || | Sbjct 8429094 CCTCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCT 8429035 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||||||||| ||||||||||||| Sbjct 8429034 TGAGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 8428975 Query 33446 CAATAAGTCTCTCTCC 33461 | | || || |||||| Sbjct 8428974 CTACAACTCGCTCTCC 8428959 Score = 100 bits (110), Expect = 4e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||||||| ||||| || || | |||||||||||||| || || |||||||| ||||| Sbjct 8427081 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGC 8427022 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || |||||||| | ||||| |||| ||| |||||| | ||| ||||| Sbjct 8427021 AATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTAAAACGTTC 8426962 Query 33684 CGCCAAAT 33691 | || ||| Sbjct 8426961 CACCTAAT 8426954 >seq6 Length=61284144 Score = 111 bits (122), Expect = 2e-19 Identities = 250/372 (67%), Gaps = 4/372 (1%) Strand=Plus/Minus Query 33507 CTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATC 33566 ||| |||||||| ||||| ||||| || ||| |||||| || | || || | ||| Sbjct 57314448 CTTCTTTACACAGGGCATAGTTTCAATAGCACGGAAGAGAAAGGCCTCCTCTTTGCCATC 57314389 Query 33567 TTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCAT 33626 ||||| | || || || | ||||| || ||||| ||||| | ||| || || | | Sbjct 57314388 TTTAA--TGCGTGTCAATAAGGAGACTCTATATTTCAGAATGCAAGTTGTCTGTGTC-AC 57314332 Query 33627 CTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGC 33686 || || || |||||| | | || || ||||||||||||| || || ||||| | | | Sbjct 57314331 CTTGAAGCCACAGAAACGTGTTGCTTCTGTAATCTGTACTTTTGGACTAAATCACTGCAC 57314272 Query 33687 CAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 | |||||| | ||| ||||| |||||| || ||| | ||| |||||| Sbjct 57314271 CGGGGTTTCATATCCAGCTCCATCACTTACTGCAATGAAAGCCCGAGCCTGTGATATAAA 57314212 Query 33747 ATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTC 33806 || | | || | || | || ||||| | | | || || || | |||||| || Sbjct 57314211 ATCTCTCTCCACAGGCTTCAG-GGCTTCCAGTGCTGAAAGTCCTTGGAGAGATCTACCTC 57314153 Query 33807 TTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTG 33866 ||||||||| ||| || ||||| || || | ||||| | ||| ||| ||| |||| Sbjct 57314152 CTCCACTGTCTCAAAGGAAGCCTCAGCTTTCTGGTACATCTGCCAAATGCCATGGTATTT 57314093 Query 33867 GATTGGGAAAAT 33878 || || ||||| Sbjct 57314092 GACAGGAAAAAT 57314081 >seq35 Length=24201928 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || ||||| || ||||| |||||||| ||||| || || | || || Sbjct 13540743 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 13540802 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 13540803 AGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 13540861 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||||||||||||||| ||||| ||||||||||||||||| || || || || |||| Sbjct 13547394 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGATAA 13547453 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33796 |||| || || |||| ||| || || ||||| | | || ||| || |||| Sbjct 13547454 AATACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 13547504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622923162024920