Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq48 143 3e-29
seq60 138 1e-27
seq6 111 2e-19
seq35 107 2e-18
>seq48
Length=18573065
Score = 143 bits (158), Expect = 3e-29
Identities = 114/137 (83%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| ||||||||||| ||||| ||||| ||||||||||| || |||||||| ||||| |
Sbjct 2886231 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAAATGTTGCTGGTATAAGGTTCAATG 2886290
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
|||||||||||||||||||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 2886291 GACTCATTATTTCCCAAAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2886350
Query 62457 CTATTTCTAAGACCGTA 62473
|| ||||| | ||| ||
Sbjct 2886351 CTGTTTCTTACACCATA 2886367
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| |||||||||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 2895432 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 2895491
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
|| || || |||||||| ||||| || | ||| |||||| | | || || |||||||
Sbjct 2895492 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCCAAATGCCA 2895551
Query 63332 CGGTTCCAAGTATATGGC 63349
|| |||| ||| || ||
Sbjct 2895552 AGGCTCCAGGTAAATAGC 2895569
Score = 96.9 bits (106), Expect = 4e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014
|||| || | ||| |||||||| ||||| | ||| || || || || || || || || |
Sbjct 2907862 CACTGAACACTTTCTTTGTTTCTTTGTGCAAATTAGACACAGCAATCCTTGCTGCCAGGA 2907921
Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074
|||||||||| || || | ||||| | || || ||| |||| || |||| ||| || |
Sbjct 2907922 TGGCATAATCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTATCTA 2907981
Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120
||| || || || || ||| | |||| ||||| || || |||||
Sbjct 2907982 GTTCCACGGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 2908027
Score = 86.0 bits (94), Expect = 8e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634
|||| || || ||||| || | || || | | ||||| || || || || || || |
Sbjct 2890558 CATAGGTTTCATATGGACCATACTCCTTGGACAAGTCACAGCTGGCTTCCAAGGCTCCAT 2890617
Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 62694
||||||||||||| ||||| | |||||| || || || || | || ||||| ||||
Sbjct 2890618 AATAAATGGTTTCAAAGATTTGCTTATTCAGCAACTGGGCCTCTGGACTCTCAAAAGGAT 2890677
Query 62695 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754
| | | |||||||| || || || | ||||| || ||||| || || || | ||| |
Sbjct 2890678 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 2890737
Query 62755 TCTTATTAGA 62764
||||| ||
Sbjct 2890738 GTTTATTTGA 2890747
>seq60
Length=14545593
Score = 138 bits (152), Expect = 1e-27
Identities = 112/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| || || || || |||||||||||||| |||||||| || || || || |
Sbjct 8429094 CCTCATCTCTGCTGATCAGCTCATTGGAAAACGTGAGGCCGGGCATCAGTCCTCGTTTCT 8429035
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| ||||| || || || || |||||||||||||||||||| |||||||||||||
Sbjct 8429034 TGAGCCAGAATATCGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCAGCAAAGG 8428975
Query 33446 CAATAAGTCTCTCTCC 33461
| | || || ||||||
Sbjct 8428974 CTACAACTCGCTCTCC 8428959
Score = 100 bits (110), Expect = 4e-16
Identities = 99/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623
|||||||| ||||| || || | |||||||||||||| || || |||||||| |||||
Sbjct 8427081 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAGTGTATGTTTTCCATGGC 8427022
Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683
|| || || || |||||||| | ||||| |||| ||| |||||| | ||| |||||
Sbjct 8427021 AATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTAAAACGTTC 8426962
Query 33684 CGCCAAAT 33691
| || |||
Sbjct 8426961 CACCTAAT 8426954
>seq6
Length=61284144
Score = 111 bits (122), Expect = 2e-19
Identities = 250/372 (67%), Gaps = 4/372 (1%)
Strand=Plus/Minus
Query 33507 CTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATC 33566
||| |||||||| ||||| ||||| || ||| |||||| || | || || | |||
Sbjct 57314448 CTTCTTTACACAGGGCATAGTTTCAATAGCACGGAAGAGAAAGGCCTCCTCTTTGCCATC 57314389
Query 33567 TTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCAT 33626
||||| | || || || | ||||| || ||||| ||||| | ||| || || | |
Sbjct 57314388 TTTAA--TGCGTGTCAATAAGGAGACTCTATATTTCAGAATGCAAGTTGTCTGTGTC-AC 57314332
Query 33627 CTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGC 33686
|| || || |||||| | | || || ||||||||||||| || || ||||| | | |
Sbjct 57314331 CTTGAAGCCACAGAAACGTGTTGCTTCTGTAATCTGTACTTTTGGACTAAATCACTGCAC 57314272
Query 33687 CAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746
| |||||| | ||| ||||| |||||| || ||| | ||| ||||||
Sbjct 57314271 CGGGGTTTCATATCCAGCTCCATCACTTACTGCAATGAAAGCCCGAGCCTGTGATATAAA 57314212
Query 33747 ATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTC 33806
|| | | || | || | || ||||| | | | || || || | |||||| ||
Sbjct 57314211 ATCTCTCTCCACAGGCTTCAG-GGCTTCCAGTGCTGAAAGTCCTTGGAGAGATCTACCTC 57314153
Query 33807 TTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTG 33866
||||||||| ||| || ||||| || || | ||||| | ||| ||| ||| ||||
Sbjct 57314152 CTCCACTGTCTCAAAGGAAGCCTCAGCTTTCTGGTACATCTGCCAAATGCCATGGTATTT 57314093
Query 33867 GATTGGGAAAAT 33878
|| || |||||
Sbjct 57314092 GACAGGAAAAAT 57314081
>seq35
Length=24201928
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387
|| ||||| || || ||||| || ||||| |||||||| ||||| || || | || ||
Sbjct 13540743 TCATCTCTGCTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 13540802
Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446
||||| ||||| | ||| || ||||| || ||||| ||||||||||| |||||||||||
Sbjct 13540803 AGCCAGAATATAGCAGCAAAGGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 13540861
Score = 93.3 bits (102), Expect = 5e-14
Identities = 87/111 (78%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745
|||||||||||||||| ||||| ||||||||||||||||| || || || || ||||
Sbjct 13547394 CCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACGTGAGAGATAA 13547453
Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33796
|||| || || |||| ||| || || ||||| | | || ||| || ||||
Sbjct 13547454 AATACTTCTCATCTGATGTAAGCTTGTTCCAGTGAGGGAGATCCTTTGATA 13547504
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622923162024920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |