Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq48 100 7e-16 seq60 84.2 6e-11 >seq48 Length=18573065 Score = 100 bits (110), Expect = 7e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 2894232 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGCACTCCGTACATG 2894173 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| |||| || || || | Sbjct 2894172 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACGATCAAATGC 2894113 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | ||||| ||| Sbjct 2894112 AGCAACCTGTGCACAGAAATAGTAGAATATACC 2894080 >seq60 Length=14545593 Score = 84.2 bits (92), Expect = 6e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||||| || ||||| || ||||||||||| | ||| | || || ||||| Sbjct 8428974 GCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCGATATTCTGGCTC 8429033 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 || ||||| | | | ||||| || || |||||||| |||||| | || ||| |||||||| Sbjct 8429034 AAGAAACGAGGACTGATGCCCGGCCTCACGTTTTCCAATGAGCTGATCAGCAGAGATGAG 8429093 Query 22621 G 22621 | Sbjct 8429094 G 8429094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303302049514034