Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq48 100 7e-16
seq60 84.2 6e-11
>seq48
Length=18573065
Score = 100 bits (110), Expect = 7e-16
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| ||| |||| |||| ||||||||| || || |||| |||||||| || || || |||
Sbjct 2894232 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGCACTCCGTACATG 2894173
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230
| ||||||||||| || || || ||| |||||||||| |||| || || || |
Sbjct 2894172 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACGATCAAATGC 2894113
Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263
|||||||| || || || || | ||||| |||
Sbjct 2894112 AGCAACCTGTGCACAGAAATAGTAGAATATACC 2894080
>seq60
Length=14545593
Score = 84.2 bits (92), Expect = 6e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560
|| ||||||| || ||||| || ||||||||||| | ||| | || || |||||
Sbjct 8428974 GCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCGATATTCTGGCTC 8429033
Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620
|| ||||| | | | ||||| || || |||||||| |||||| | || ||| ||||||||
Sbjct 8429034 AAGAAACGAGGACTGATGCCCGGCCTCACGTTTTCCAATGAGCTGATCAGCAGAGATGAG 8429093
Query 22621 G 22621
|
Sbjct 8429094 G 8429094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303302049514034
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |