Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq48 87.8 2e-12 seq25 86.0 6e-12 >seq48 Length=18573065 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 145670 TATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTA 145729 |||| ||| || || | ||||| ||||| |||||||| |||||||| || ||||| || Sbjct 2894084 TATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 2894143 Query 145730 CTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTC 145789 || |||| || || | || ||||||||||||||||| ||| ||||| ||| | | Sbjct 2894144 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGAGTGCCTGTCTCTGTCTGAGAC 2894203 Query 145790 TCCACGAT 145797 || | ||| Sbjct 2894204 TCAATGAT 2894211 >seq25 Length=29395486 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || ||||||||||||||||| |||| | | ||||||||| |||||||| |||||||| Sbjct 9574117 TCTTCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTA 9574176 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || || | | ||||| ||||| ||| || | || | ||| | | Sbjct 9574177 TCCTGGATCTTGGCCTCCACATTCTCCATGGTATCACTGGGTTCCACCTCCAGGGTGATG 9574236 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| || || || ||||| || ||||| Sbjct 9574237 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 9574271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471994586206080