Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq48 87.8 2e-12
seq25 86.0 6e-12
>seq48
Length=18573065
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 145670 TATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTA 145729
|||| ||| || || | ||||| ||||| |||||||| |||||||| || ||||| ||
Sbjct 2894084 TATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 2894143
Query 145730 CTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTC 145789
|| |||| || || | || ||||||||||||||||| ||| ||||| ||| | |
Sbjct 2894144 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGAGTGCCTGTCTCTGTCTGAGAC 2894203
Query 145790 TCCACGAT 145797
|| | |||
Sbjct 2894204 TCAATGAT 2894211
>seq25
Length=29395486
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139
|| ||||||||||||||||| |||| | | ||||||||| |||||||| ||||||||
Sbjct 9574117 TCTTCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTA 9574176
Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199
|| ||| || || | | ||||| ||||| ||| || | || | ||| | |
Sbjct 9574177 TCCTGGATCTTGGCCTCCACATTCTCCATGGTATCACTGGGTTCCACCTCCAGGGTGATG 9574236
Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| || ||||| || || || ||||| || |||||
Sbjct 9574237 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 9574271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471994586206080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |