Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq1 113 3e-20
seq23 109 4e-19
seq14 93.3 3e-14
seq17 87.8 1e-12
>seq1
Length=79733107
Score = 113 bits (124), Expect = 3e-20
Identities = 82/95 (86%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 591050 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 591109
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||| | |||||||||||||||||
Sbjct 591110 TCATCCATTCATGCCTGGCACTAATTAGATGACGA 591144
>seq23
Length=29576853
Score = 109 bits (120), Expect = 4e-19
Identities = 78/90 (87%), Gaps = 5/90 (6%)
Strand=Plus/Minus
Query 25907 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATC 25961
|||||||||||||||||||| ||| |||||||| ||||| || ||||||||| |||
Sbjct 552579 CGTTCCCTTGGCTGTGGTTTGGCTGGATAGTAGGTAGGGACAGCGGGAATCTCGTTCATC 552520
Query 25962 CTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||||||| |||||||||||||||||||
Sbjct 552519 CATTCATGCGTGTCACTAATTAGATGACGA 552490
>seq14
Length=35217250
Score = 93.3 bits (102), Expect = 3e-14
Identities = 154/220 (70%), Gaps = 8/220 (4%)
Strand=Plus/Plus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | ||
Sbjct 7097616 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 7097675
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | ||| || || ||||| || || | ||| ||||| || | ||||| || |
Sbjct 7097676 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGGAATTCCTTCCTTATT 7097735
Query 38225 CATAATTTTTTGCTT--CACATTCTGGACAGTATCTCC--ACTTTCAACTTCTAATGTAA 38280
| || || ||| ||| |||| | ||| ||| |||||| || | | |
Sbjct 7097736 CTGGATCTTGGCCTTTGCACTTTCT----ATTATATCCGAGGGTTCAACCTCGAGAGCGA 7097791
Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
| || || ||||| | | |||||||||| |||||||| ||
Sbjct 7097792 TGGTCTTTCCCGTAAGGATTTTCACGAAAATCTGCATCTT 7097831
>seq17
Length=33267342
Score = 87.8 bits (96), Expect = 1e-12
Identities = 72/88 (82%), Gaps = 5/88 (6%)
Strand=Plus/Minus
Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963
||||||||||||||||||| || | |||||| ||||| || ||||||||| ||||
Sbjct 7589485 TTCCCTTGGCTGTGGTTTCACTGGGTAGTAGGTAGGGAAAGTGGGAATCTCGTTCATCCA 7589426
Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991
||||||| | |||| |||||||||| ||
Sbjct 7589425 TTCATGCACATCACGAATTAGATGATGA 7589398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334934598344297
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |