Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1 113 3e-20 seq23 109 4e-19 seq14 93.3 3e-14 seq17 87.8 1e-12 >seq1 Length=79733107 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 591050 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 591109 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| | ||||||||||||||||| Sbjct 591110 TCATCCATTCATGCCTGGCACTAATTAGATGACGA 591144 >seq23 Length=29576853 Score = 109 bits (120), Expect = 4e-19 Identities = 78/90 (87%), Gaps = 5/90 (6%) Strand=Plus/Minus Query 25907 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATC 25961 |||||||||||||||||||| ||| |||||||| ||||| || ||||||||| ||| Sbjct 552579 CGTTCCCTTGGCTGTGGTTTGGCTGGATAGTAGGTAGGGACAGCGGGAATCTCGTTCATC 552520 Query 25962 CTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||||||| ||||||||||||||||||| Sbjct 552519 CATTCATGCGTGTCACTAATTAGATGACGA 552490 >seq14 Length=35217250 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| |||| | || Sbjct 7097616 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 7097675 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| || | ||||| || | Sbjct 7097676 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAAGAGGAATTCCTTCCTTATT 7097735 Query 38225 CATAATTTTTTGCTT--CACATTCTGGACAGTATCTCC--ACTTTCAACTTCTAATGTAA 38280 | || || ||| ||| |||| | ||| ||| |||||| || | | | Sbjct 7097736 CTGGATCTTGGCCTTTGCACTTTCT----ATTATATCCGAGGGTTCAACCTCGAGAGCGA 7097791 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || ||||| | | |||||||||| |||||||| || Sbjct 7097792 TGGTCTTTCCCGTAAGGATTTTCACGAAAATCTGCATCTT 7097831 >seq17 Length=33267342 Score = 87.8 bits (96), Expect = 1e-12 Identities = 72/88 (82%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCT 25963 ||||||||||||||||||| || | |||||| ||||| || ||||||||| |||| Sbjct 7589485 TTCCCTTGGCTGTGGTTTCACTGGGTAGTAGGTAGGGAAAGTGGGAATCTCGTTCATCCA 7589426 Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| | |||| |||||||||| || Sbjct 7589425 TTCATGCACATCACGAATTAGATGATGA 7589398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334934598344297