Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq44 107 4e-18 >seq44 Length=19882732 Score = 107 bits (118), Expect = 4e-18 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 68236 CTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGA 68295 |||||| ||||| | ||| ||| || ||||||||||| ||||| || | || |||| Sbjct 2427255 CTCCGC--AGGCGAAGCACCGTGTGCAGGGTGGACTCTTTCTGGATATTGCAGTCTGAGA 2427312 Query 68296 GTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAA 68355 | || | || || || | ||| || || || || | || | || ||||| ||||| | Sbjct 2427313 GAGTGCCGCCGTCCTCCAGCTGTTTGCCCGCAAAAGTCAGACACTGCTGGTCAGGTGGGA 2427372 Query 68356 TGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTT 68415 |||| |||| |||||| || || || ||||| ||| || |||| | | || || | Sbjct 2427373 TGCCCTCCTCGTCTTGGATTTTAGCTTTGACATTCTCAATAATGTCACCGGGCTCGACCT 2427432 Query 68416 CCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || ||| | |||||||| || || ||||| || Sbjct 2427433 TGAGGGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGTAT 2427478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921586836895640