Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq35 93.3 8e-14 seq60 84.2 4e-11 >seq35 Length=24201928 Score = 93.3 bits (102), Expect = 8e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || ||| |||| |||||| | || || || || || ||||||||||| |||| || Sbjct 13540876 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCGGGATCCTTTGCT 13540817 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||||| ||| | | |||| | ||||| |||||||| || || || ||||| Sbjct 13540816 GCTATATTCTGGCTAAAGAAAAGAGGTCTT-ATGCCTGGACTCACTTTTTCTAATGAACT 13540758 Query 42815 CATCAGCAGGGACGA 42829 ||||||||| || || Sbjct 13540757 CATCAGCAGAGATGA 13540743 >seq60 Length=14545593 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || || |||||||| || ||| | || || || || |||||| Sbjct 8428971 GTAGCCTTTGCTGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCGATATTCTGG 8429030 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | ||||||||| ||||| || || || || || |||||||| || Sbjct 8429031 CTCAAGAAACGAGGACT-GATGCCCGGCCTCACGTTTTCCAATGAGCTGATCAGCAGAGA 8429089 Query 42827 CGAGG 42831 |||| Sbjct 8429090 TGAGG 8429094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944302760311120