Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq25 120 7e-22 >seq25 Length=29395486 Score = 120 bits (132), Expect = 7e-22 Identities = 140/189 (74%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 |||| || ||||| | || ||| | || ||||||| || || ||||| ||||| || Sbjct 9574087 TGGAGGTTGTAGTCAGAAAGAGTGAGGCCATCTTCTAGCTGCTTGCCTGCAAAGATGAGC 9574146 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 | ||| || | ||||| ||||||||||||||||| || || | ||| || || || Sbjct 9574147 CTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTCCACATTCTCCATG 9574206 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | ||| || | ||| || || || ||||| ||||| |||||||| ||||| ||||| || Sbjct 9574207 GTATCACTGGGTTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATT 9574266 Query 288469 TGCATTATG 288477 |||||| || Sbjct 9574267 TGCATTTTG 9574275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179607742087986