Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq15 181 2e-40
seq11 122 1e-22
>seq15
Length=34426505
Score = 181 bits (200), Expect = 2e-40
Identities = 223/302 (74%), Gaps = 2/302 (1%)
Strand=Plus/Minus
Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934
||| | |||||| | || ||||| || ||||| || || ||||| |||||||| |
Sbjct 13021988 AACACTGAACGCAGTGAAAGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTGA 13021929
Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994
|| || || | ||| | |||||||| ||||| || || ||||| || |||||||| |
Sbjct 13021928 GGCAGTGTTGATGATCTTAAAACCTACTTCCCCACCAAAAGTGCTAGGCTTCCAGTAGTC 13021869
Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054
||||| || || || ||||||| |||||||||||||| || || ||||| || |
Sbjct 13021868 AGGGGAACATATAGGATTACCCATGAGTCCTTTCAAGGAAAATGGTGCTCCCAGTTCTAC 13021809
Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGC-CAGTGTAGA 9113
||| |||| || ||||||||| | ||||| || ||||| || | |||| ||| || |
Sbjct 13021808 CATGGTCTCCCCAAAGATGGCATCTGGACGAGGCTTTTCTACCA-GAAGAGCAGGATACA 13021750
Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCAC 9173
| || | || |||| ||| || ||||| ||||||||||| ||||| || || ||||| |
Sbjct 13021749 GCTCCATGGCATCGATGTCACCGTAGAGTGCTTCCAACTCCGCAGCCATTTCTTTCTCTC 13021690
Query 9174 CT 9175
||
Sbjct 13021689 CT 13021688
Score = 111 bits (122), Expect = 2e-19
Identities = 199/289 (69%), Gaps = 4/289 (1%)
Strand=Plus/Minus
Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495
|| ||||| || || |||| ||||| || || |||| | ||| || | | | || |
Sbjct 13021027 CCAGCAATTTGCCTGCTGAATGATTCCACAAACTGGGTAAGTCCATGTTCTAGTAAGAGG 13020968
Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555
|| |||||||| | || |||| | |||| | ||| | || |||| |||
Sbjct 13020967 GAGTTGTTGTAGAGAAACTGTTGAAAGTTGTACTCCTGGTCATCAATTTGAAAGGTGTCA 13020908
Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615
|||| |||| ||||||| | ||||| || || ||||| || || || ||||||||||||
Sbjct 13020907 GGCAGAAGAGGATGCCAGTGATAGAGTGTGTTAAACTCAGCAGCAATGCGGTTCTGGTAC 13020848
Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673
|| || | ||| ||| || | |||||||||||| | || | ||| ||||| || |
Sbjct 13020847 TGGAATTGTTGGT--TGAAAAGCAGCTCCGGGTCAAACTTCAGTTTGAAATGGTAGCCAC 13020790
Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722
| | ||||| ||||| | | || | ||| ||||| ||||| || ||
Sbjct 13020789 TCAAGTGCTGTACATAGTCTTCAATCACAATCTTAATAGTTTCTCCTGT 13020741
Score = 104 bits (114), Expect = 3e-17
Identities = 129/177 (73%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| || | ||| | |||||||| ||||||||| ||| ||| | ||
Sbjct 13019327 TCTTACCCCATGACCTAGGCCTTTGGTGAAAGCTGGTCCTCGCTTAGGATCTGTCTTGAA 13019268
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
|| || || || ||||| || | || || || ||||||| ||| ||||||||||| ||
Sbjct 13019267 GAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGGTC 13019208
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
||||| || | || | | | || ||| |||||||||| | | ||||| || ||
Sbjct 13019207 AGGGATGAACTTTCTTCTTAGGAGAAATTTTTCCACAATCTCTTTCGAATCAGGAAG 13019151
Score = 93.3 bits (102), Expect = 6e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | ||||| |||||| | || || ||||| |||| ||| ||
Sbjct 13018733 TCACCTTTCACACCCATGGGAGTTGGGCAGCCGTCAGCCACAGGAGGAAGAGCTCTGGTG 13018674
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|||||||| || || ||||| ||||||||||| || |||||||| | | ||| ||
Sbjct 13018673 TAATAGGAGAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGCACGTTATAAGTT 13018614
Query 10507 GGGGGACTGTCAATCA 10522
|| || || |||||||
Sbjct 13018613 GGCGGGCTCTCAATCA 13018598
>seq11
Length=39176111
Score = 122 bits (134), Expect = 1e-22
Identities = 178/249 (71%), Gaps = 2/249 (1%)
Strand=Plus/Minus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || || |||| || || | || || || || ||||| || |||||||||
Sbjct 24311677 GTGGCCGTCTTGACAATGTTGAAGCCCATCTCGCCACCAAATGTGCTCGGCTTCCAGTAC 24311618
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
|||| || |||||| ||| | | ||| ||||| | |||||| |||||||| | ||
Sbjct 24311617 TCCGGAGAACAGATGGGATTCCCTAGGAGGCCTTTGAGGGAAAAGGGAGCCCCAATTTCT 24311558
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111
|| || ||||| || ||||||| ||| | || || | || | |||| | |||
Sbjct 24311557 ATCATACTCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAA-GAAGCAGCCCCGGGTA 24311499
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| || | || |||| ||| ||||| || | |||||||| ||||| |||||||||||
Sbjct 24311498 GAACTCCAAGGCATCGATGTCTCCATATAGCTCCTCCAACTCAGCAGCCATCTCCTTCTC 24311439
Query 9172 ACCTACAAG 9180
||||||||
Sbjct 24311438 TCCTACAAG 24311430
Score = 86.0 bits (94), Expect = 9e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAGGCGGTA 9627
|||||| |||||||| |||||||| | | || ||||| ||||||| || | |
Sbjct 24306464 TGCCAGTGGTAGAGGTGGTTGAACTCCGTGGAAATGCGGTTGCGGTACTGGAACTGGACA 24306405
Query 9628 CCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACA 9687
|| ||||| | |||||||||||| ||||||| | | ||| || || || ||||| ||
Sbjct 24306404 CCAAACAGCAGCTCCGGGTCAAACTTTAGCTGCAGGAAGTAGCCACTCAGCTGCTGCACG 24306345
Query 9688 TACTGTGTGATTATAATGTTAATGGTTTCCCC 9719
|||| ||| | ||| || ||||| |||||
Sbjct 24306344 TACTCCTCGATCACAATCTTGATGGTCTCCCC 24306313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723700073145800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |