Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq15 181 2e-40 seq11 122 1e-22 >seq15 Length=34426505 Score = 181 bits (200), Expect = 2e-40 Identities = 223/302 (74%), Gaps = 2/302 (1%) Strand=Plus/Minus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | |||||| | || ||||| || ||||| || || ||||| |||||||| | Sbjct 13021988 AACACTGAACGCAGTGAAAGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTGA 13021929 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| | |||||||| ||||| || || ||||| || |||||||| | Sbjct 13021928 GGCAGTGTTGATGATCTTAAAACCTACTTCCCCACCAAAAGTGCTAGGCTTCCAGTAGTC 13021869 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 ||||| || || || ||||||| |||||||||||||| || || ||||| || | Sbjct 13021868 AGGGGAACATATAGGATTACCCATGAGTCCTTTCAAGGAAAATGGTGCTCCCAGTTCTAC 13021809 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGC-CAGTGTAGA 9113 ||| |||| || ||||||||| | ||||| || ||||| || | |||| ||| || | Sbjct 13021808 CATGGTCTCCCCAAAGATGGCATCTGGACGAGGCTTTTCTACCA-GAAGAGCAGGATACA 13021750 Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCAC 9173 | || | || |||| ||| || ||||| ||||||||||| ||||| || || ||||| | Sbjct 13021749 GCTCCATGGCATCGATGTCACCGTAGAGTGCTTCCAACTCCGCAGCCATTTCTTTCTCTC 13021690 Query 9174 CT 9175 || Sbjct 13021689 CT 13021688 Score = 111 bits (122), Expect = 2e-19 Identities = 199/289 (69%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 9436 CCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATG 9495 || ||||| || || |||| ||||| || || |||| | ||| || | | | || | Sbjct 13021027 CCAGCAATTTGCCTGCTGAATGATTCCACAAACTGGGTAAGTCCATGTTCTAGTAAGAGG 13020968 Query 9496 GAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCA 9555 || |||||||| | || |||| | |||| | ||| | || |||| ||| Sbjct 13020967 GAGTTGTTGTAGAGAAACTGTTGAAAGTTGTACTCCTGGTCATCAATTTGAAAGGTGTCA 13020908 Query 9556 GGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTAC 9615 |||| |||| ||||||| | ||||| || || ||||| || || || |||||||||||| Sbjct 13020907 GGCAGAAGAGGATGCCAGTGATAGAGTGTGTTAAACTCAGCAGCAATGCGGTTCTGGTAC 13020848 Query 9616 TGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGC 9673 || || | ||| ||| || | |||||||||||| | || | ||| ||||| || | Sbjct 13020847 TGGAATTGTTGGT--TGAAAAGCAGCTCCGGGTCAAACTTCAGTTTGAAATGGTAGCCAC 13020790 Query 9674 TGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | | ||||| ||||| | | || | ||| ||||| ||||| || || Sbjct 13020789 TCAAGTGCTGTACATAGTCTTCAATCACAATCTTAATAGTTTCTCCTGT 13020741 Score = 104 bits (114), Expect = 3e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| || | ||| | |||||||| ||||||||| ||| ||| | || Sbjct 13019327 TCTTACCCCATGACCTAGGCCTTTGGTGAAAGCTGGTCCTCGCTTAGGATCTGTCTTGAA 13019268 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 || || || || ||||| || | || || || ||||||| ||| ||||||||||| || Sbjct 13019267 GAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGGTC 13019208 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || | || | | | || ||| |||||||||| | | ||||| || || Sbjct 13019207 AGGGATGAACTTTCTTCTTAGGAGAAATTTTTCCACAATCTCTTTCGAATCAGGAAG 13019151 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| |||||| | || || ||||| |||| ||| || Sbjct 13018733 TCACCTTTCACACCCATGGGAGTTGGGCAGCCGTCAGCCACAGGAGGAAGAGCTCTGGTG 13018674 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || ||||| ||||||||||| || |||||||| | | ||| || Sbjct 13018673 TAATAGGAGAGGTTAGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGCACGTTATAAGTT 13018614 Query 10507 GGGGGACTGTCAATCA 10522 || || || ||||||| Sbjct 13018613 GGCGGGCTCTCAATCA 13018598 >seq11 Length=39176111 Score = 122 bits (134), Expect = 1e-22 Identities = 178/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| || || | || || || || ||||| || ||||||||| Sbjct 24311677 GTGGCCGTCTTGACAATGTTGAAGCCCATCTCGCCACCAAATGTGCTCGGCTTCCAGTAC 24311618 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| ||| | | ||| ||||| | |||||| |||||||| | || Sbjct 24311617 TCCGGAGAACAGATGGGATTCCCTAGGAGGCCTTTGAGGGAAAAGGGAGCCCCAATTTCT 24311558 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || || ||||| || ||||||| ||| | || || | || | |||| | ||| Sbjct 24311557 ATCATACTCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAA-GAAGCAGCCCCGGGTA 24311499 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || |||| ||| ||||| || | |||||||| ||||| ||||||||||| Sbjct 24311498 GAACTCCAAGGCATCGATGTCTCCATATAGCTCCTCCAACTCAGCAGCCATCTCCTTCTC 24311439 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 24311438 TCCTACAAG 24311430 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9568 TGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAGGCGGTA 9627 |||||| |||||||| |||||||| | | || ||||| ||||||| || | | Sbjct 24306464 TGCCAGTGGTAGAGGTGGTTGAACTCCGTGGAAATGCGGTTGCGGTACTGGAACTGGACA 24306405 Query 9628 CCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACA 9687 || ||||| | |||||||||||| ||||||| | | ||| || || || ||||| || Sbjct 24306404 CCAAACAGCAGCTCCGGGTCAAACTTTAGCTGCAGGAAGTAGCCACTCAGCTGCTGCACG 24306345 Query 9688 TACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 |||| ||| | ||| || ||||| ||||| Sbjct 24306344 TACTCCTCGATCACAATCTTGATGGTCTCCCC 24306313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723700073145800