Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq48 109 9e-19 >seq48 Length=18573065 Score = 109 bits (120), Expect = 9e-19 Identities = 117/152 (77%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || || | ||||||| || |||||||| ||| || || || || | Sbjct 2883762 CCTGCTTCCAGCCATAGAAGTGCATGCTAGTCAGTTTGCCATAGTTAGGCTCAGCAATAT 2883821 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | ||||||| |||||||||||| || || ||| ||||| | || || ||||| |||| | Sbjct 2883822 GGATGTTCAAAGACTGGCTTTGATCAAT-AAAAGCGCCTCTCTCGGCTGCCATCTTGAGA 2883880 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 ||||| ||||| ||||| |||||||| ||||| Sbjct 2883881 ATGGTTTTCTGAGAAATTTCCCACACAGTCTT 2883912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795124516948720